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jeffersonfparil
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poolgen
Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids
GNU General Public License v3.0
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Cubic spline implementation for identifying windows
#27
jeffersonfparil
opened
1 month ago
0
Restored Fst multithreading, fix watterson_theta header
#26
cjdjpj
closed
1 month ago
0
feat: argument bounds checking and option filtering
#25
cjdjpj
closed
2 months ago
0
feat: min_coverage_breadth
#24
cjdjpj
closed
3 months ago
0
feat: min_coverage_breadth
#23
cjdjpj
closed
3 months ago
2
feat: keep_lowercase_reference flag
#22
cjdjpj
closed
4 months ago
0
feat: keep_if_any_meets_coverage flag
#21
cjdjpj
closed
4 months ago
2
feature: remove_monoallelic flag
#20
cjdjpj
closed
4 months ago
2
Flag to include/exclude lowercase reference alleles
#19
jeffersonfparil
closed
4 months ago
10
Update github actions
#18
jeffersonfparil
closed
4 months ago
0
Enable lowercase reference bases in pileup
#17
cjdjpj
closed
4 months ago
0
Improve error handling by defining an error type
#16
jeffersonfparil
opened
5 months ago
1
Correcting StudentT distribution df as n-1 from p-1
#15
jeffersonfparil
closed
8 months ago
0
Test sparsity handling
#14
jeffersonfparil
opened
11 months ago
0
Make `load_table()` more general to make it easier to load output files for testing
#13
jeffersonfparil
opened
11 months ago
0
Sync unit tests are a mess
#12
jeffersonfparil
opened
11 months ago
0
Implement adaptive LD-kNN imputation algorithm
#11
jeffersonfparil
closed
11 months ago
1
Sliding windows implementation for Fst, Watterson's theta, and Tajima's D
#10
jeffersonfparil
closed
1 year ago
0
Allow for PANTHER databases to be linked instead of downloaded
#9
jeffersonfparil
closed
1 year ago
1
Improve unit tests
#8
jeffersonfparil
closed
1 year ago
0
Try to reimplement in other OS
#7
jeffersonfparil
opened
1 year ago
2
Implement some popgen analyses
#6
jeffersonfparil
closed
1 year ago
3
Update readme
#5
jeffersonfparil
closed
1 year ago
0
Feature addition: make use of all the fields of PredictionPerformace
#4
jeffersonfparil
closed
1 year ago
1
Implement this simulation algorithm with LD
#3
jeffersonfparil
opened
1 year ago
1
Improving penalised-like GP model
#2
jeffersonfparil
closed
1 year ago
0
Matrix inversion
#1
jeffersonfparil
closed
1 year ago
0