I also tested the parallel commands, it pops the following error and failed to run:
knock-knock parallel test_ep300a 1 --group pacbio
Traceback (most recent call last):
File "/opt/conda/bin/knock-knock", line 236, in <module>
args.func(args)
File "/opt/conda/bin/knock-knock", line 32, in parallel
exps = knock_knock.experiment.get_all_experiments(args.project_directory, args.conditions)
File "/opt/conda/lib/python3.10/site-packages/knock_knock/experiment.py", line 1650, in get_all_experiments
exp = exp_class(base_dir, batch, name, description=description, progress=progress)
File "/opt/conda/lib/python3.10/site-packages/knock_knock/experiment.py", line 139, in __init__
features_to_show=self.target_info.features_to_show,
File "/opt/conda/lib/python3.10/site-packages/hits/utilities.py", line 190, in memoized_f
setattr(self, attr_name, f(self))
File "/opt/conda/lib/python3.10/site-packages/knock_knock/experiment.py", line 206, in target_info
supplemental_indices=self.supplemental_indices,
File "/opt/conda/lib/python3.10/site-packages/hits/utilities.py", line 190, in memoized_f
setattr(self, attr_name, f(self))
File "/opt/conda/lib/python3.10/site-packages/knock_knock/experiment.py", line 194, in supplemental_indices
return {name: locations[name] for name in self.supplemental_index_names}
TypeError: 'int' object is not iterable
Hi Jeff,
I also tested the
parallel
commands, it pops the following error and failed to run:Any input?