Closed Isabel-ql closed 11 months ago
jeffsocal
commented
11 months ago No worries. You need to install the Biostrings Packages. Use the following code snip to install the Bioconductor package manager, then the three packages you need. Also outlined on the documentation page, link below.
install.packages("BiocManager")
BiocManager::install(c("limma","qvalue","fgsea"))
https://jeffsocal.github.io/tidyproteomics/index.html#installation
Isabel-ql
commented
11 months ago Hi!
Yes, I installed Biostrings, and the other three packages from Bioconductor package manager, and it works now!
Thanks very much!
Best, Qun
From: Jeff Jones @.> Reply to: jeffsocal/tidyproteomics @.> Date: Monday, 11 December 2023 at 19:33 To: jeffsocal/tidyproteomics @.> Cc: "Qun Liu (JIC)" @.>, Author @.***> Subject: Re: [jeffsocal/tidyproteomics] Fail to install tidyproteomics package (Issue #13)
You don't often get email from @.*** Learn why this is importanthttps://aka.ms/LearnAboutSenderIdentification
No worries. You need to install the Biostrings Packages. Use the following code snip to install the Bioconductor package manager, then the three packages you need. Also outlined on the documentation page, link below.
install.packages("BiocManager")
BiocManager::install(c("limma","qvalue","fgsea"))
https://jeffsocal.github.io/tidyproteomics/index.html#installation
— Reply to this email directly, view it on GitHubhttps://github.com/jeffsocal/tidyproteomics/issues/13#issuecomment-1850752492, or unsubscribehttps://github.com/notifications/unsubscribe-auth/APW2GSX7MJVE3RSF4AYNOKDYI5NXPAVCNFSM6AAAAABAQHA7KWVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQNJQG42TENBZGI. You are receiving this because you authored the thread.Message ID: @.***>
Hi,
I'd like to analyse my mass spec data with tidyproteomic package in R, however, I could't install the package. The error says that dependency 'Biostrings' is not available for package 'tidyproteomics'. See the screenshot below. Could anybody help to solve this problem? Thank you very much!
Best, Qun