num_peptides, num_unique peptides does not import properly MaxQuant

jeffsocal / tidyproteomics

An S3 data object and framework for common quantitative proteomic analyses

https://jeffsocal.github.io/tidyproteomics/

MIT License

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num_peptides, num_unique peptides does not import properly MaxQuant #5

Closed TARobison closed 1 year ago

TARobison commented 1 year ago

When importing proteinGroups.txt, I get NA values for all num_peptides, num_unique_peptides. This is not the case for num_psms, however. I have tried modifying the MaxQuant_proteins.tsv with no effect. Any advice would be appreciated

jeffsocal commented 1 year ago

Would you be willing to send along the file or a sample file I can examine? You can email me at the publication's corresponding author.

jeffsocal commented 1 year ago

Thanks for pointing this out, I need to update the import definition to allow for the counts to register - this is a bug. I will push an update shortly.