Hi, I can not use the method M.eff to establish a threshold and obtain sig markers in my GWAS analysis. My genotypic matrix contains 92465 markers and the function set.threshold does not run if the matrix contains more than 5000 markers. Is there a way to solve this issue? Thank you!
Hi, I can not use the method
M.effto establish a threshold and obtain sig markers in my GWAS analysis. My genotypic matrix contains 92465 markers and the functionset.thresholddoes not run if the matrix contains more than 5000 markers. Is there a way to solve this issue? Thank you!data2 <- set.threshold(data.loco.scan,method="M.eff",level=0.05)Best
Cesar