Minimizer counts column in bracken report

jenniferlu717 / Bracken

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

http://ccb.jhu.edu/software/bracken/index.shtml

GNU General Public License v3.0

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Minimizer counts column in bracken report #211

Open mlarjim opened 1 year ago

mlarjim commented 1 year ago

Hi! I would like to know how to include kraken2's report column "Number of distinct minimizers in read data associated with this taxon" in Bracken's report file so as to identify false positives. As in the case of reads, does the number of minimizers need to be corrected to take into account the minimizers of higher taxonomic levels?

Thank you!

s-blunt commented 5 months ago

Hi, I've been wondering the same thing. Did you find a solution?