Closed AhmedEzat closed 3 years ago
Can you please provide more information?
Thank you
I am using Windows 10 and python 3.8.8 (Anaconda distribution).
propka3 installed though the command pip install --upgrade propka
Note I tried using propka server https://www.ddl.unimi.it/vegaol/propka.htm and it works with the file but I want to know what is the problem with my installation
I cannot attach my pdb file and I don't know what is the problem.
@AhmedEzat you may need to zip the file before you attach it.
Can you please just add a .txt
extension to your PDB file and post it that way? I don't want to introduce additional variables by converting to/from Word. Thanks.
Model1.txt This is the file.
Thanks for your help
Is there any solution to my problem?
Many thanks in advance for your efforts.
Not yet, sorry.
Hello. Your PDB file appears to be missing an integer for the "MODEL" statement which is required by the standard: https://www.wwpdb.org/documentation/file-format-content/format33/sect9.html#MODEL
Dear Sir,
I am not sure if the issue had been raisen before but I get this error while trying to run propka3
Traceback (most recent call last): File "e:\anaconda\lib\runpy.py", line 194, in _run_module_as_main return _run_code(code, main_globals, None, File "e:\anaconda\lib\runpy.py", line 87, in _run_code exec(code, run_globals) File "E:\Anaconda\Scripts\propka3.exe__main__.py", line 7, in
File "e:\anaconda\lib\site-packages\propka\run.py", line 42, in main
my_molecule = read_molecule_file(pdbfile, my_molecule)
File "e:\anaconda\lib\site-packages\propka\input.py", line 98, in read_molecule_file
conformations, conformation_names = read_pdb(
File "e:\anaconda\lib\site-packages\propka\input.py", line 237, in read_pdb
for (name, atom) in lines:
File "e:\anaconda\lib\site-packages\propka\input.py", line 173, in get_atom_lines_from_pdb
model = int(line[6:])
ValueError: invalid literal for int() with base 10: ' \n'