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jermp / sshash

A compressed, associative, exact, and weighted dictionary for k-mers.
MIT License
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Parse Cuttlefish1 output #28

Closed jermp closed 2 months ago

jermp commented 1 year ago

The output is described here: https://github.com/COMBINE-lab/cuttlefish#cuttlefish-1-output. We want to parse the .cf_seg files output by Cuttlefish1 to build the unitigs from a reference dBG.

jermp commented 2 months ago

Done as of 51169e07f5403ed1907a4ea08f6178ea0dcadc6e. Thanks @NPSDC!