search

jernst98 / ChromHMM

GNU General Public License v3.0
74 stars 18 forks source link

Bug: ChromHMM in screen #9

Closed freedog8 closed 6 years ago

freedog8 commented 6 years ago

when using screen command and then execute ChromHMM in that newly created screen, it use abort with: Writing to file OUTPUTSAMPLE/transitions_10.txt Writing to file OUTPUTSAMPLE/emissions_10.txt Exception in thread "main" java.awt.AWTError: Can't connect to X11 window server using 'localhost:11.0' as the value of the DISPLAY variable. at sun.awt.X11GraphicsEnvironment.initDisplay(Native Method) at sun.awt.X11GraphicsEnvironment.access$200(X11GraphicsEnvironment.java:65) at sun.awt.X11GraphicsEnvironment$1.run(X11GraphicsEnvironment.java:115) at java.security.AccessController.doPrivileged(Native Method) at sun.awt.X11GraphicsEnvironment.(X11GraphicsEnvironment.java:74) at java.lang.Class.forName0(Native Method) at java.lang.Class.forName(Class.java:264) at java.awt.GraphicsEnvironment.createGE(GraphicsEnvironment.java:103) at java.awt.GraphicsEnvironment.getLocalGraphicsEnvironment(GraphicsEnvironment.java:82) at java.awt.image.BufferedImage.createGraphics(BufferedImage.java:1181) at org.tc33.jheatchart.HeatChart.measureComponents(HeatChart.java:1406) at org.tc33.jheatchart.HeatChart.getChartImage(HeatChart.java:1301) at org.tc33.jheatchart.HeatChart.getChartImage(HeatChart.java:1354) at edu.mit.compbio.ChromHMM.Util.printImageToSVG(Util.java:140) at edu.mit.compbio.ChromHMM.ChromHMM.printEmissionImage(ChromHMM.java:1285) at edu.mit.compbio.ChromHMM.ChromHMM.trainParameters(ChromHMM.java:6204) at edu.mit.compbio.ChromHMM.ChromHMM.buildModel(ChromHMM.java:885) at edu.mit.compbio.ChromHMM.ChromHMM.main(ChromHMM.java:10485)

ernstlab commented 6 years ago

See this thread: https://github.com/jernst98/ChromHMM/issues/1

-Jason