SUSE 11 support

[xuezhe1984]

gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -f pic -g -O2 -c kill_wrapper.c -o kill_wrapper.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -f pic -g -O2 -c ncores.c -o ncores.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -f pic -g -O2 -c rlimits.c -o rlimits.o rlimits.c: In function ârlimit_rttimeâ: rlimits.c:114: error: âRLIMIT_RTTIMEâ undeclared (first use in this function) rlimits.c:114: error: (Each undeclared identifier is reported only once rlimits.c:114: error: for each function it appears in.) rlimits.c: In function ârlimit_wrapperâ: rlimits.c:165: warning: implicit declaration of function âprlimitâ make: *\ [rlimits.o] Error 1 ERROR: compilation failed for package âRAppArmorâ

• removing â/usr/local/lib64/R/library/RAppArmorâ

The downloaded source packages are in â/tmp/RtmpHN4Jh7/downloaded_packagesâ Updating HTML index of packages in '.Library' Making packages.html ... done Warning message: In install.packages("RAppArmor") : installation of package âRAppArmorâ had non-zero exit status

[xuezhe1984]

and I have check the /usr/local/lib64/R/include,and all the source in R and RAppArmor ,there is no place define the RLIMIT_RTTIME.

I use the command grep -r "RLIMIT_RTTIME" * to search it.

[xuezhe1984]

and for I want to ignore the RLIMIT_RTTIME issue ,I commet out the function rlimit_rttime（）in rlimits.c.

it has the install problem like below: hadoop1821:/home/tester/Desktop # R CMD INSTALL RAppArmor

• installing to library â/usr/local/lib64/R/libraryâ
• installing source package âRAppArmorâ ... file âsrc/rlimits.câ has the wrong MD5 checksum * libs gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rlimits.c -o rlimits.o rlimits.c: In function ârlimit_wrapperâ: rlimits.c:167: warning: implicit declaration of function âprlimitâ gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c setaffinity_wrapper.c -o setaffinity_wrapper.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c setgid_wrapper.c -o setgid_wrapper.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c setpgid_wrapper.c -o setpgid_wrapper.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c setpriority_wrapper.c -o setpriority_wrapper.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c setuid_wrapper.c -o setuid_wrapper.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o RAppArmor.so aa_change_hat_wrapper.o aa_change_profile_wrapper.o aa_find_mountpoint_wrapper.o aa_getcon_wrapper.o aa_is_enabled_wrapper.o aa_revert_hat_wrapper.o getaffinity_count.o getaffinity_wrapper.o getgid_wrapper.o getpgid_wrapper.o getpriority_wrapper.o getuid_wrapper.o interactivity.o kill_wrapper.o ncores.o rlimits.o setaffinity_wrapper.o setgid_wrapper.o setpgid_wrapper.o setpriority_wrapper.o setuid_wrapper.o /usr/lib64/libapparmor.so -L/usr/local/lib64/R/lib -lR installing to /usr/local/lib64/R/library/RAppArmor/libs * R * inst * preparing package for lazy loading \ help ** installing help indices * building package indices \ testing if installed package can be loaded Error : .onLoad failed in loadNamespace() for 'RAppArmor', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/usr/local/lib64/R/library/RAppArmor/libs/RAppArmor.so': /usr/local/lib64/R/library/RAppArmor/libs/RAppArmor.so: undefined symbol: aa_getcon Error: loading failed Execution halted ERROR: loading failed
• removing â/usr/local/lib64/R/library/RAppArmorâ

[xuezhe1984]

• installing to library â/usr/local/lib64/R/libraryâ
• installing source package âRAppArmorâ ... file âsrc/rlimits.câ has the wrong MD5 checksum * libs make: Nothing to be done for `all'. installing to /usr/local/lib64/R/library/RAppArmor/libs * R * inst * preparing package for lazy loading \ help ** installing help indices * building package indices \ testing if installed package can be loaded Error : .onLoad failed in loadNamespace() for 'RAppArmor', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/usr/local/lib64/R/library/RAppArmor/libs /RAppArmor.so': /usr/local/lib64/R/library/RAppArmor/libs/RAppArmor.so: undefined symbol: aa_g etcon Error: loading failed Execution halted ERROR: loading failed
• removing â/usr/local/lib64/R/library/RAppArmorâ

[xuezhe1984]

ld -d RAppArmor.so ld: warning: cannot find entry symbol _start; not setting start address RAppArmor.so: undefined reference to aa_getcon' RAppArmor.so: undefined reference toaa_find_mountpoint' RAppArmor.so: undefined reference to prlimit' RAppArmor.so: undefined reference toaa_is_enabled'

[jeroen]

It looks like you use a linux kernel that is too old, and does not support some of the rlimit/apparmor functionality. The RAppArmor package requires a relatively recent Linux version. Things will work out of the box on OpenSuse 12, but on OpenSuse 11 is a bit old and some essential functionality is missing from the kernel. Can you print the output of:

uname -a

The easiest way to get things to work would be to upgrade to OpenSuse 12. If you really need Suse 11, we can try to create a special version of AppArmor. However, that would require quite some work. From my first impression, the following Linux functions are unavailable in suse 11:

• aa_getcon
• aa_findmountpoint
• aa_is_enabled
• prlimit
• RLIMIT_RTTIME

Do you have a opportunity to test on Suse 12?

[hceylan97]

what is ever solved for suse version 11?

[jeroen]

The kernel is too old. It works on opensuse 12. Suse enterprise 12 will be released later this year.