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installing source package ‘protolite’ ... package ‘protolite’ successfully unpacked and MD5 sums checked using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-pthread Using PKG_LIBS=-lprotobuf Found C++17 compiler: g++ -std=gnu++17 -g -O2 -ffile-prefix-map=/build/r-base-H8urij/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 Using libprotoc 25.3 from /home/wrf_hydro_fnl/WRFHYDRO_STANDALONE/miniconda3/envs/rgee_py/bin/protoc Warning: protoc version libprotoc 25.3 might not match libproto version 3.12.4. ** libs using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -pthread -DUSENEWAPI -I'/home/wrf_hydro_fnl/R/x86_64-pc-linux-gnu-library/4.4/Rcpp/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-H8urij/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -pthread -DUSENEWAPI -I'/home/wrf_hydro_fnl/R/x86_64-pc-linux-gnu-library/4.4/Rcpp/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-H8urij/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c geobuf.cpp -o geobuf.o In file included from geobuf.cpp:1: geobuf.pb.h:15:2: error: #error "This file was generated by a newer version of protoc which is" 15 | #error "This file was generated by a newer version of protoc which is" | ^~~~~ geobuf.pb.h:16:2: error: #error "incompatible with your Protocol Buffer headers. Please update" 16 | #error "incompatible with your Protocol Buffer headers. Please update" | ^~~~~ geobuf.pb.h:17:2: error: #error "your headers." 17 | #error "your headers." | ^~~~~ In file included from geobuf.cpp:1: geobuf.pb.h:29:10: fatal error: google/protobuf/generated_message_tctable_decl.h: No such file or directory 29 | #include "google/protobuf/generated_message_tctable_decl.h" | ^~~~~~~~~~~~~~ compilation terminated. make: *** [/usr/lib/R/etc/Makeconf:204: geobuf.o] Error 1 ERROR: compilation failed for package ‘protolite’
removing ‘/home/wrf_hydro_fnl/R/x86_64-pc-linux-gnu-library/4.4/protolite’ Warning in install.packages : installation of package ‘protolite’ had non-zero exit status

The downloaded source packages are in ‘/tmp/Rtmp6U5P18/downloaded_packages’

If you use anaconda you should probably install this package through anaconda: https://anaconda.org/conda-forge/r-protolite

Op zo 16 jun. 2024 12:01 schreef Ved Prakash @.***>:

install.packages("protolite") Installing package into ‘/home/wrf_hydro_fnl/R/x86_64-pc-linux-gnu-library/4.4’ (as ‘lib’ is unspecified) trying URL 'https://cloud.r-project.org/src/contrib/protolite_2.3.0.tar.gz ' Content type 'application/x-gzip' length 25204 bytes (24 KB)

downloaded 24 KB

installing source package ‘protolite’ ... package ‘protolite’ successfully unpacked and MD5 sums checked using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-pthread Using PKG_LIBS=-lprotobuf Found C++17 compiler: g++ -std=gnu++17 -g -O2 -ffile-prefix-map=/build/r-base-H8urij/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 Using libprotoc 25.3 from /home/wrf_hydro_fnl/WRFHYDRO_STANDALONE/miniconda3/envs/rgee_py/bin/protoc Warning: protoc version libprotoc 25.3 might not match libproto version 3.12.4. ** libs using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -pthread -DUSENEWAPI -I'/home/wrf_hydro_fnl/R/x86_64-pc-linux-gnu-library/4.4/Rcpp/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-H8urij/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -pthread -DUSENEWAPI -I'/home/wrf_hydro_fnl/R/x86_64-pc-linux-gnu-library/4.4/Rcpp/include' -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/build/r-base-H8urij/r-base-4.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c geobuf.cpp -o geobuf.o In file included from geobuf.cpp:1: geobuf.pb.h:15:2: error: #error "This file was generated by a newer version of protoc which is" 15 | #error "This file was generated by a newer version of protoc which is" | ^~~~~ geobuf.pb.h:16:2: error: #error "incompatible with your Protocol Buffer headers. Please update" 16 | #error "incompatible with your Protocol Buffer headers. Please update" | ^~~~~ geobuf.pb.h:17:2: error: #error "your headers." 17 | #error "your headers." | ^~~~~ In file included from geobuf.cpp:1: geobuf.pb.h:29:10: fatal error: google/protobuf/generated_message_tctable_decl.h: No such file or directory 29 | #include "google/protobuf/generated_message_tctable_decl.h" | ^~~~~~~~~~~~~~ compilation terminated. make: *** [/usr/lib/R/etc/Makeconf:204: geobuf.o] Error 1 ERROR: compilation failed for package ‘protolite’

removing ‘/home/wrf_hydro_fnl/R/x86_64-pc-linux-gnu-library/4.4/protolite’ Warning in install.packages : installation of package ‘protolite’ had non-zero exit status

The downloaded source packages are in ‘/tmp/Rtmp6U5P18/downloaded_packages’

— Reply to this email directly, view it on GitHub https://github.com/jeroen/protolite/issues/26, or unsubscribe https://github.com/notifications/unsubscribe-auth/AABUZ77AP6MPVOAUTZGOORDZHVO5XAVCNFSM6AAAAABJMOXBK2VHI2DSMVQWIX3LMV43ASLTON2WKOZSGM2TKNRTGE2TQOA . You are receiving this because you are subscribed to this thread.Message ID: @.***>

jeroen / protolite

install.packages("protolite") ERROR #26

install.packages("protolite") Installing package into ‘/home/wrf_hydro_fnl/R/x86_64-pc-linux-gnu-library/4.4’ (as ‘lib’ is unspecified) trying URL 'https://cloud.r-project.org/src/contrib/protolite_2.3.0.tar.gz' Content type 'application/x-gzip' length 25204 bytes (24 KB)