Replacement terminology for "ARG v1" (big) vs "ARG v2" (small)

jeromekelleher / sc2ts

Infer a succinct tree sequence from SARS-COV-2 variation data

MIT License

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Replacement terminology for "ARG v1" (big) vs "ARG v2" (small) #104

Closed hyanwong closed 1 year ago

hyanwong commented 1 year ago

We currently have 2 main SARS-CoV-2 "ARG"s, the larger one which only goes up to mid 2021, and the smaller one which is subsampled and goes up to mid 2022. We switched from "big" vs "small" to "v1" versus "v2" to refer to these tree sequences, but there's probably a nicer description to use. We can throw around some ideas in this issue.

hyanwong commented 1 year ago

Here are some ideas:

"dense" (or "unreduced") vs "subsampled"
"wide" vs "long"
"time-limited" vs "sample-limited"

szhan commented 1 year ago

I kind of prefer "wide" versus "long".

hyanwong commented 1 year ago

Yes, there's something nice and simple about that. We can get Sally's opinion tomorrow too.

jeromekelleher commented 1 year ago

"Wide" vs "long" is good, if we can explain the thinking clearly early on.

jeromekelleher commented 1 year ago

We don't actually deal with this here (this is where we make the method), so going to close this issue.

hyanwong commented 1 year ago

Everyone likes it. So good to close anyway.