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jeromekelleher / sc2ts

Infer a succinct tree sequence from SARS-COV-2 variation data
MIT License
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Add function to systematise exporting recombinants #110

Closed jeromekelleher closed 1 year ago

jeromekelleher commented 1 year ago

Closes #108

How does this look at @szhan?

The only thing I've changed is to output "Unknown" instead of "Recombinant" for pango lineage status, which seems less confusing to me.

export

hyanwong commented 1 year ago

The other methods seems to distinguish "XX_summary" from "YY_report". I assume that the "report" is in more detail. So might this be called "recombination_node_report"? I will add the MRCA code to this