jeromekelleher / sc2ts

Infer a succinct tree sequence from SARS-COV-2 variation data
MIT License
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Fixing missing GISAID lineages #138

Closed a-ignatieva closed 1 year ago

a-ignatieva commented 1 year ago

Was missing out some lineages because (for example) EPI_ISL_000000.1 in the ts metadata appears only as EPI_ISL_000000 in the GISAID metadata file. Still a hundred missing or so, but for some other reasons.