jeromekelleher / sc2ts

Infer a succinct tree sequence from SARS-COV-2 variation data
MIT License
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Remove 0 and L from recombinant breakpoints #161

Open jeromekelleher opened 1 year ago

jeromekelleher commented 1 year ago

We store the breakpoints as a list of the recombination breakpoints plus the end coordinates, in various places in the metadata. This is unhelpful, we should just store the breakpoints so that breakpoints is one-less than the length of parents and the same length as breakpoint intervals.