jeromekelleher / sc2ts

Infer a succinct tree sequence from SARS-COV-2 variation data
MIT License
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Ingest data from primary sources #170

Open jeromekelleher opened 1 year ago

jeromekelleher commented 1 year ago

We're currently assuming aligngments and metadata are in a particular format, which is a result of the approaches described in the paper repo. We should bring this process in here, locally. There are probably some improvements we can make, and likely some steps we can cut out.

See https://github.com/jeromekelleher/sc2ts-paper/issues/153