jeromekelleher / sc2ts

Infer a succinct tree sequence from SARS-COV-2 variation data
MIT License
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Detect false recombinations by mismatch in inheritors for parents #174

Open jeromekelleher opened 1 year ago

jeromekelleher commented 1 year ago

This example from the long ARG is a clear example where the recombined in parent has very few descendants:

crappy-recomb

Perhaps would could systematically check for this? (One parent has dramatically fewer descendants than others)?