jeromekelleher / sc2ts

Infer a succinct tree sequence from SARS-COV-2 variation data
MIT License
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Detect false recombinations by checking if we have mutations with very few inheritors #175

Open jeromekelleher opened 1 year ago

jeromekelleher commented 1 year ago

This example from the Long ARG (node 544949) shows a clear example where mutations have been subsequently reverted, and end up being inherited by very few descendants:

Screenshot from 2023-06-05 16-51-08

Similar to #174

jeromekelleher commented 1 year ago

(These mutations might not actually be on that node though, I haven't looked properly)