Sample sequences may be come in lowercase, for example, in the latest batch of sequences kindly prepared by Martin Hunt from the Iqbal group. Here is a simple tweak to convert lowercased sequences into uppercased sequences, which can be mapped to the uppercase nucleotide characters in core.ALLELES. Note that a sequence is stored as a Numpy array (dtype="<U1"), and the entire array is uppercased.
Sample sequences may be come in lowercase, for example, in the latest batch of sequences kindly prepared by Martin Hunt from the Iqbal group. Here is a simple tweak to convert lowercased sequences into uppercased sequences, which can be mapped to the uppercase nucleotide characters in
core.ALLELES. Note that a sequence is stored as a Numpy array (dtype="<U1"), and the entire array is uppercased.