jeromekelleher / sc2ts

Infer a succinct tree sequence from SARS-COV-2 variation data
MIT License
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Add parameter search for recombinants #93

Open jeromekelleher opened 1 year ago

jeromekelleher commented 1 year ago

It would be useful to know what the mismatch threshold for a recombinant would need to be for it to not be a recombinant. We can probably make a guess at what this should be, and pick a few values on either side of this to verify.

Ideally this will be added back in to the recombinant metadata.