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jeromekelleher / sc2ts

Infer a succinct tree sequence from SARS-COV-2 variation data
MIT License
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Add site_summary data frame #98

Open jeromekelleher opened 1 year ago

jeromekelleher commented 1 year ago

Return a dataframe with a row for every site and columns for the things we want to summarise:

  1. total number of mutations
  2. Breakdown of those mutations into classes
  3. Masked samples
jeromekelleher commented 1 year ago

Include site diversity (but over what time frame?)