search

jerryji1993 / DNABERT

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
https://doi.org/10.1093/bioinformatics/btab083
Apache License 2.0
578 stars 156 forks source link

install packages using pip #112

Open lingfengxu opened 1 year ago

lingfengxu commented 1 year ago

pip version 21.3.1 (the latest) is needed, otherwise you will meet errors while installing packages using pip.

lingfengxu commented 1 year ago

cd DNABERT python3 -m pip install --editable . cd examples python3 -m pip install -r requirements.txt You can try several times to ensure you successfully install all packages required.

lingfengxu commented 1 year ago

git clone https://github.com/NVIDIA/apex cd apex pip install -v --no-cache-dir --global-option="--cpp_ext" --global-option="--cuda_ext" ./ python version >= 3.7 is needed. However, the instruction specifies python version 3.6.