Extra tissues to match with GTex

jergosh commented 5 years ago

Hi, We would very much like to use gganatograms for a couple of projects running in our group. I think it fits very well with what we would like to demonstrate using GTex data, except that the pituitary and salivary glands are missing in gganatogram. Would it be possible to add them as two (optional) tissues? I think matching between gganatogram and GTex tissues would potentially be useful to other people using these data.

Best, Greg

jespermaag commented 5 years ago

Hi Greg, I'll see if I can add them this week. I'll keep you posted.

jergosh commented 5 years ago

That's great! Thanks very much, appreciate it.

jespermaag commented 5 years ago

Fixed it now for human.

hgMale_key[hgMale_key$type=='hormone',]
                 organ    type colour      value
1        thyroid_gland hormone yellow  0.9906961
5      pituitary_gland hormone yellow 13.0039467
38      salivary_gland hormone yellow  9.6428882
39       parotid_gland hormone yellow 18.9632077
40 submandibular_gland hormone yellow  3.7169400
45       adrenal_gland hormone yellow 19.1863695

 hgFemale_key[hgFemale_key$type=='hormone',]
                 organ colour    type      value
16     pituitary_gland yellow hormone  0.4179739
43       thyroid_gland yellow hormone 13.7657837
45       parotid_gland yellow hormone 19.4480276
50       adrenal_gland yellow hormone 11.3729465
55      salivary_gland yellow hormone  8.5902632
69 submandibular_gland yellow hormone 15.0929987

jespermaag / gganatogram

Extra tissues to match with GTex #15