jessegmeyerlab / proteomics-tutorial

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Claiming sections #54

Open jessegmeyerlab opened 2 years ago

jessegmeyerlab commented 2 years ago

If you want to let people know you are working on a section please post here!

Currently I have commitments for MS instrument types: Yuming Jiang and Jie Sun Liquid separations: Simion Kreimer

Expressed interest Fragmentation: Nick Riley Enrichment: Nick Riley Biological Interpretation: Oliver Crook and Norbert

yarribas commented 2 years ago

Just learning about this nice initiative. I would be very happy to help in "protein enrichment" section if it's OK with all of you.

lichenlady94 commented 2 years ago

I'll work on the peptide quantification part for now and will add any other sections as I finish up!

j-berg commented 2 years ago

If no one is working on the "Statistical hypothesis testing", I can help out with that.

lichenlady94 commented 2 years ago

Is the biochemistry basic section complete? It seems a bit lacking, no?

jessegmeyerlab commented 2 years ago

Is the biochemistry basic section complete? It seems a bit lacking, no?

If you have ideas about stuff to add we welcome additions to any section!

rileynm commented 2 years ago

Following up here to say I am still interested in writing/helping with fragmentation and enrichment session. @yarribas, it would be great to get your help on the enrichment section. I'll reach out to you on Twitter since I see it is linked on your GitHub profile.

jessegmeyerlab commented 1 year ago

To update everyone with the plan, I am waiting for a section on LC and on types of MS that I think are foundations we need to have a complete article. I hope to have them incorporated over the next month.

Since we get closer to submitting I just wanted to check if anyone else still has sections outstanding they want to contribute?

norbertvolkmar commented 1 year ago

This might be a bit late, but I have started working on a small sub-section of the biological interpetation section relating to orthogonal validation of MS data that goes beyond in silico network analysis etc.. Not sure if that's (still) needed?

jessegmeyerlab commented 1 year ago

This might be a bit late, but I have started working on a small sub-section of the biological interpetation section relating to orthogonal validation of MS data that goes beyond in silico network analysis etc.. Not sure if that's (still) needed?

Yes that would be great thank you! Do you think you can finish it this month?

norbertvolkmar commented 1 year ago

yes, i think so!

norbertvolkmar commented 1 year ago

@jessegmeyerlab - I will definitely have that section ready for integration by the end of the month. Since it's a rather broad topic, it will inevitably need some refinement, but that can be done in additional rounds of editing.

jessegmeyerlab commented 1 year ago

Awesome thank you!

On Sun, Mar 12, 2023, 3:49 AM Norbert Volkmar @.***> wrote:

@jessegmeyerlab https://github.com/jessegmeyerlab - I will definitely have that section ready for integration by the end of the month. Since it's a rather broad topic, it will inevitably need some refinement, but that can be done in additional rounds of editing.

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jessegmeyerlab commented 1 year ago

Following up here to say I am still interested in writing/helping with fragmentation and enrichment session. @yarribas, it would be great to get your help on the enrichment section. I'll reach out to you on Twitter since I see it is linked on your GitHub profile.

@rileynm are you still planning to write fragmentation and/or enrichment?