Open runphaster opened 3 years ago
I also get the same situation. I guess mostly is a problem of multiprocessing since it usually gets stuck when the second time of 'processing line' was called.
Which mentioned should be located at nearly the line 183.
It happened in my running too. I checked and found the reason is that DeepVirFinder can't handle sequences longer than 2.1Mb. I tried removing sequences longer than 2.1Mb in my input, and then DeepVirFinder works. I also tried inputting only one sequence with 2.8Mb length, DeepVirFinder got stuck for a few hours and can't predict it. When I cut this same sequence into two smaller subsequences (2.1Mb and 0.7Mb), DeepVirFinder predicted it successfully in a few minutes.
I have a couple dozen sequences that were in my input files that cause the code to get stuck. The load average goes to 0, and progress moving thru the input file ceases. I would like to forward my collection of sequences it gets stuck on so the problem can be debugged/identified going forward.