jessieren / DeepVirFinder

Identifying viruses from metagenomic data by deep learning
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Runtime Error during test-run #28

Open ghost opened 2 years ago

ghost commented 2 years ago

When tryying to run the test i always get this error.

(dvf) C:\Users\X\DeepVirFinder>python dvf.py -i ./test/crAssphage.fa -o ./test/ -l 300 Using Theano backend.

  1. Loading Models. model directory C:\Users\X\DeepVirFinder\models
  2. Encoding and Predicting Sequences. processing line 1 processing line 1389 Using Theano backend.
  3. Loading Models. model directory C:\Users\X\DeepVirFinder\models
  4. Encoding and Predicting Sequences. processing line 1 processing line 1389 Traceback (most recent call last): File "", line 1, in File "C:\Users\X.conda\envs\dvf\lib\multiprocessing\spawn.py", line 105, in spawn_main exitcode = _main(fd) File "C:\Users\X.conda\envs\dvf\lib\multiprocessing\spawn.py", line 114, in _main prepare(preparation_data) File "C:\Users\X.conda\envs\dvf\lib\multiprocessing\spawn.py", line 225, in prepare _fixup_main_from_path(data['init_main_from_path']) File "C:\Users\X.conda\envs\dvf\lib\multiprocessing\spawn.py", line 277, in _fixup_main_from_path run_name="__mp_main") File "C:\Users\X.conda\envs\dvf\lib\runpy.py", line 263, in run_path pkg_name=pkg_name, script_name=fname) File "C:\Users\X.conda\envs\dvf\lib\runpy.py", line 96, in _run_module_code mod_name, mod_spec, pkg_name, script_name) File "C:\Users\X.conda\envs\dvf\lib\runpy.py", line 85, in _run_code exec(code, run_globals) File "C:\Users\X\DeepVirFinder\dvf.py", line 211, in pool = multiprocessing.Pool(core_num) File "C:\Users\X.conda\envs\dvf\lib\multiprocessing\context.py", line 119, in Pool context=self.get_context()) File "C:\Users\X.conda\envs\dvf\lib\multiprocessing\pool.py", line 174, in init self._repopulate_pool() File "C:\Users\X.conda\envs\dvf\lib\multiprocessing\pool.py", line 239, in _repopulate_pool w.start() File "C:\Users\X.conda\envs\dvf\lib\multiprocessing\process.py", line 105, in start self._popen = self._Popen(self) File "C:\Users\X.conda\envs\dvf\lib\multiprocessing\context.py", line 322, in _Popen return Popen(process_obj) File "C:\Users\X.conda\envs\dvf\lib\multiprocessing\popen_spawn_win32.py", line 33, in init__ prep_data = spawn.get_preparation_data(process_obj._name) File "C:\Users\X.conda\envs\dvf\lib\multiprocessing\spawn.py", line 143, in get_preparation_data _check_not_importing_main() File "C:\Users\X.conda\envs\dvf\lib\multiprocessing\spawn.py", line 136, in _check_not_importing_main is not going to be frozen to produce an executable.''') RuntimeError: An attempt has been made to start a new process before the current process has finished its bootstrapping phase.

    This probably means that you are not using fork to start your
    child processes and you have forgotten to use the proper idiom
    in the main module:
    
        if __name__ == '__main__':
            freeze_support()
            ...
    
    The "freeze_support()" line can be omitted if the program
    is not going to be frozen to produce an executable.
zhongshengbin269 commented 2 years ago

Hi there, May I ask you how to solve this problem? I have the same problem as you.

ghost commented 2 years ago

I only used the program briefly, but I think a fresh linux installation fixed my problem.