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jessieren / DeepVirFinder

Identifying viruses from metagenomic data by deep learning
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DeepVirFinder isn't work post conda install #32

Open raw937 opened 2 years ago

raw937 commented 2 years ago

Standard Install

conda create --name dvf python=3.6 numpy theano=1.0.3 keras=2.2.4 scikit-learn Biopython h5py
conda activate dvf

Error 1

python dvf.py -h
python: can't open file 'dvf.py': [Errno 2] No such file or directory

Error 2

dvf.py -h
dvf.py: command not found

Please let me know?

many thanks, Rick

raw937 commented 2 years ago

okay, its not fully integrated with conda. So once you use conda for the dependencies.

Then do this:

conda activate dvf
git clone https://github.com/jessieren/DeepVirFinder
cd DeepVirFinder
python dvf.py -h

Help worked after this.

How come it isn't fully integrated into conda?