Open bananabenana opened 2 years ago
Hi, you have made a great tool here.
I have used this tool on a bunch of single-isolate assemblies to try and ID phage regions and have two queries regarding processing these outputs:
Is there any way to extract the fasta coordinates of the phage region which have k-mer matches? Or do I just get a score for the entire contig?
What threshold would you confidently consider phage? Above say, 0.8ish?
Example output
Thanks
Hi, you have made a great tool here.
I have used this tool on a bunch of single-isolate assemblies to try and ID phage regions and have two queries regarding processing these outputs:
Is there any way to extract the fasta coordinates of the phage region which have k-mer matches? Or do I just get a score for the entire contig?
What threshold would you confidently consider phage? Above say, 0.8ish?
Example output
Thanks