Open ilnamkang opened 4 years ago
I also have the same messages when running the program;
did you figure out the issue? Or if its a problem
I didn't find a solution for this issue.
For my small data (a few hundred metagenomic contigs), turning off "-c" flag and using only 1 core (default value) gave me the best speed.
Hi,
When I run DeepVirFinder using multiIcores (e.g. 72 cores), I'm encountering warning messages like below. DeepVirFinder seems to be getting slower with these messages and use only <1 core in average.
Warning messages:
INFO (theano.gof.compilelock): Waiting for existing lock by process '52117' (I am process '52060') INFO (theano.gof.compilelock): To manually release the lock, delete /home/user/.theano/compiledir_Linux-5.3--generic-x86_64-with-Ubuntu-18.04-bionic-x86_64-3.6.9-64/lock_dir INFO (theano.gof.compilelock): Waiting for existing lock by process '52117' (I am process '52054') INFO (theano.gof.compilelock): To manually release the lock, delete /home/user/.theano/compiledir_Linux-5.3--generic-x86_64-with-Ubuntu-18.04-bionic-x86_64-3.6.9-64/lock_dir (continues maybe endlessly)
I'm running DeepVirFinder on Ubuntu 18.04. And, the messages don't disappear after deleting .theano directory.
Thanks.