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jessieren / VirFinder

VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
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Use output of Prodigal for VirFinder #25

Open drelo opened 3 years ago

drelo commented 3 years ago

Dear developers, I have a brief question after running megahit I run prodigal for all my metagenomic samples (using the -meta flag) for using them in other analyses. Should I use the prodigal output instead of the initial output of megahit? Would this improve or acsellerate the estimation? I noticed in the publication that you used Prodigal to corroborate the results (and I will use blastn to assess the taxonomy of the contigs identified by VirFinder).

Thanks for your help.

jessieren commented 3 years ago

Hi drelo,

Sorry for my late response. If you still need help, you may contact Nathan Ahlgren @nahlgren for help.

Best, Jessie

drelo commented 3 years ago

No problem, thanks for the heads up Best, Andres

El dom, 15 ago 2021 a las 14:10, Jessie Jie Ren @.***>) escribió:

Hi drelo,

Sorry for my late response. If you still need help, you may contact Nathan Ahlgren @nahlgren https://github.com/nahlgren for help.

Best, Jessie

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