search

jessieren / VirHostMatcher

VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison
Other
28 stars 5 forks source link

hello I wan to know how to split my fasta to per taxon a fasta file. #13

Open 778055611 opened 1 year ago

778055611 commented 1 year ago

my total virus fasta file like the following:

k141_110471||full ATCTTTCTACTAAATATACATTTGATACCTTCTTTCATTTTAGGCAAATATAATTTGCTTTTATCATAAGAGAAATATACACCCTGATAAGTTTGATAAGATTACTAACATAGTATTCACCAGCGGGATTACGACTAATGGTACAAGTCTTGATTTTTCCCTCA k141_50420||full ATGCTAAAGTTAGATGTTAGTAATATAAGTCCCCGTAGTGACCGTGAGGCTACTGCGGGGACGCTTTTTCAATTTATAGTATATAGAAACAAAAAGGGCCGGTCTGCGAGGACG k141_121756||full GCCTTTGTGCTTCTTTGTTTGCCATTTGCTATCTTGCCTTTCTACTGCCTTGTCATCATATTTCACCATATTGATTTCTTGCATAGCCTCATTCGCAAAATCACGGAGCACAAAAATGGACGGTTGTCGTACACCCTGAATATGTGAGCACTACCAATGTAAACATTGATGTGAACAATATAAAGGTATGGGGTGCATTGGAGTTGCTCAATTCAAAATTTGGTGCGAACTTTGTTATTCGTGGCCGAACAATAACAATCGGTACTGCCGGTATTGCTGTGGGCAATATTTTCAAGTATGGACGTGGAAACGGTTTGTACGAAATTCAACGGCAGGCAGCCGCTGACTATTCACCTCAAGGAAAACTCACAGGCTCTTGGCGACGTGGTAGTAACAGC k141_75580||full AGACAGATGCAGAGGTGTTGACCGTTCGTTGCTGGAGTTTCTGAAGCCGAAAGCAGAGGAACGGTTAGCCTTATCAAAGGAAGCCTTAAATACATAGGGAATGCCCAGCTTGTCGCAGATTGCTTTTGTACGCTGACCAATCATCAGGCTGCGCTCATAGCCTTCGAGCACGCAGGGACCGGCCATCAGCATCAGGGGATGGCCCTGACCTACTTCATAATTACCAACTTTAACGATTTGCATAAGTATCCTCCAGCTTATTTATTCATTTTAGCAAACAGCTCGTTGACTTTG

so ,I dont know how to split them to the format needed. thank you