Current code throws IndexError

[btemperton]

Trying to run the toy test example results in the following error:

` python vhm.py -v test/toyexample/virus -b test/toyexample/host -t test/toyexample/hostTaxa.txt -o ~/output

Traceback (most recent call last): File "/users/PAS1117/osu8359/tools/VirHostMatcher/vhm.py", line 236, in hostTaxaTable[hostTaxaTable=='']='unknown' IndexError: in the future, 0-d boolean arrays will be interpreted as a valid boolean index`

Run using python 3.5.2, following a successful make.

[jessieren]

Hi Ben,

Thank you very much for reporting the error.

I guess it is the problem of the inconsistency of the string types between python 2 and python 3.

Could you please try the new script attached and see if the error occurs again?

I tested the code on python 2.7 and 3.6, it works. If it does not work, could you please send me the screen output for diagnostics?

Thank you a lot.

Best, Jessie

On Tue, Jan 16, 2018 at 10:58 PM, Ben Temperton notifications@github.com wrote:

Trying to run the toy test example results in the following error:

` python vhm.py -v test/toyexample/virus -b test/toyexample/host -t test/toyexample/hostTaxa.txt -o ~/output

Traceback (most recent call last): File "/users/PAS1117/osu8359/tools/VirHostMatcher/vhm.py", line 236, in hostTaxaTable[hostTaxaTable=='']='unknown' IndexError: in the future, 0-d boolean arrays will be interpreted as a valid boolean index`

Run using python 3.5.2, following a successful make.

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[jessieren]

Sorry I realized that the attached file in the email cannot present here. I just updated the vhm.py file in the github page. Could you please download the new script and see if it works?

Thanks!

[btemperton]

Hi Jessie,

Many thanks for the rapid response! The fix you pushed to vhm.py has fixed the problem.

Best wishes, Ben

[jessieren]

Great to know!