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jessieren / VirHostMatcher

VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison
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ERROR in counting kmers #7

Open 473021677 opened 5 years ago

473021677 commented 5 years ago

Hi Ren: I am a phd student from SYSU, China. I have asked you some questions before and you are so patient to answer my questions. Now I have encountered one problem when using the tool "VirHostMatcher". When I use the following the command "python /Path_to_VirHostMatcher/vhm.py -v <Path_to_virus_folder(required)> -b <Path_to_host_folder(required)> -o <Path_to_output(required)> -t " , the screen showed like "Step 1: counting kmers for virus (Average time for counting kmers for one virus: 0.4454s) (ETR for counting kmers for viruses: 4.8996s) Step 1: counting kmers for virus ERROR in counting kmers for" and the program aborted abnormally. I don't know why this has happened and how to solve this problem. Would it be possible for you to help me? I have sent the input files and output files to your e-mail"renj@usc.edu". Thanks very much.

Sincerely, Yuan

pl19940314 commented 1 year ago

please yuan, PhD student,your problem had solved ?

Shenjinhao-123 commented 11 months ago

I also found this problem, when I use this command. "ERROR in counting kmers for Mycobacterium_phage_BellusTerra.fasta Step 1: counting kmers for virus Mycobacterium_phage_BellusTerra.fasta". I don't know why this has happened and how to solve this problem. Does anyone know how to solve this problem? My email address is "sjhsryx@163.com".

dhnihaoya commented 10 months ago

same problem happened to me，。

Step 1: counting kmers for virus KJ094032.fasta
ERROR in counting kmers for KJ094032.fasta

I am using macOS with python 3.10