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jesstytam / honours

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phylogenetic signal #45

Closed jesstytam closed 2 years ago

jesstytam commented 3 years ago

get branch lengths from nature paper

jesstytam commented 3 years ago

@itchyshin run mcmcglmm + estimate hours @wcornwell help @jessicatytam calculate phylo signal

mlagisz commented 3 years ago

Plos Biol 2019 paper - mammalian tree with branch lengths: https://pubmed.ncbi.nlm.nih.gov/31800571/

jesstytam commented 3 years ago

try this http://www.phytools.org/static.help/phylosig.html

jesstytam commented 3 years ago

there are only 4881 overlapping mammals using phylosig() right now but it seems to crach everytime i try to run it

itchyshin commented 3 years ago

@jessicatytam - could you come to see me tomorrow - how about 12? - midday

itchyshin commented 3 years ago

I mean Friday 19th (before you disappear into the middle of nowhere!)

jesstytam commented 3 years ago

Yup sure 👍🏼

jesstytam commented 3 years ago

image

itchyshin commented 3 years ago

So as I expected - body mass has the highest signal @jessicatytam - thanks

jesstytam commented 3 years ago

oh cool, i thought lower k means that the signal is lower 👍🏽

itchyshin commented 3 years ago

@jessicatytam you are correct but log(mass) has the highest k - others are much lower