Open Tubo opened 12 months ago
Hey @Tubo, I'm working on recreating this. Do you have an example of the test you're trying to run with pytest that triggers this issue?
One thing that might work is running devbox add stdenv.cc.cc.lib
, which should add the libstdc++ libraries to your dev environment.
Hey @Tubo, I'm working on recreating this. Do you have an example of the test you're trying to run with pytest that triggers this issue?
It's dead simple:
from django.test import TestCase
def test_pytest():
assert False
One thing that might work is running
devbox add stdenv.cc.cc.lib
, which should add the libstdc++ libraries to your dev environment.
Nah didn't work unfortunately:
~/P/radscheduler ❯❯❯ devbox add stdenv.cc.cc.lib
Installing package: stdenv.cc.cc.lib.
[1/1] stdenv.cc.cc.lib
[1/1] stdenv.cc.cc.lib: Success
nix: /home/tubo/Sync/Projects/radscheduler/.devbox/nix/profile/default/lib/libstdc++.so.6: version `GLIBCXX_3.4.30' not found (required by /nix/store/nd8dpdgpjkh3g3vvcjx9qdw7mjzz0l90-nix-2.13.3/lib/libnixstore.so)
nix: /home/tubo/Sync/Projects/radscheduler/.devbox/nix/profile/default/lib/libstdc++.so.6: version `GLIBCXX_3.4.30' not found (required by /nix/store/nd8dpdgpjkh3g3vvcjx9qdw7mjzz0l90-nix-2.13.3/lib/libnixutil.so)
nix: /home/tubo/Sync/Projects/radscheduler/.devbox/nix/profile/default/lib/libstdc++.so.6: version `GLIBCXX_3.4.30' not found (required by /nix/store/wy40dp0iwqs9hch6c6yqxriizzgpgm3z-aws-sdk-cpp-1.9.294/lib/libaws-cpp-sdk-transfer.so)
nix: /home/tubo/Sync/Projects/radscheduler/.devbox/nix/profile/default/lib/libstdc++.so.6: version `GLIBCXX_3.4.30' not found (required by /nix/store/wy40dp0iwqs9hch6c6yqxriizzgpgm3z-aws-sdk-cpp-1.9.294/lib/libaws-cpp-sdk-core.so)
Error: There was an error installing nix packages
source: error running "nix profile list": exit status 1
Error: There was an internal error. Run with DEVBOX_DEBUG=1 for a detailed error message, and consider reporting it at https://github.com/jetpack-io/devbox/issues
Debug information:
[DEBUG] 2023/07/19 23:22:28 go.jetpack.io/devbox/internal/boxcli/midcobra/debug.go:72: Command stderr:
[DEBUG] 2023/07/19 23:22:28 go.jetpack.io/devbox/internal/boxcli/midcobra/debug.go:74:
ExecutionID:c0c228a182d34f178f2cddfc74900523
error running "nix profile list": exit status 1
go.jetpack.io/devbox/internal/nix.ProfileList
go.jetpack.io/devbox/internal/nix/profiles.go:47
go.jetpack.io/devbox/internal/nix/nixprofile.ProfileListItems
go.jetpack.io/devbox/internal/nix/nixprofile/profile.go:28
go.jetpack.io/devbox/internal/impl.(*Devbox).extraPackagesInProfile
go.jetpack.io/devbox/internal/impl/packages.go:419
go.jetpack.io/devbox/internal/impl.(*Devbox).tidyProfile
go.jetpack.io/devbox/internal/impl/packages.go:357
go.jetpack.io/devbox/internal/impl.(*Devbox).syncPackagesToProfile
go.jetpack.io/devbox/internal/impl/packages.go:249
go.jetpack.io/devbox/internal/impl.(*Devbox).ensurePackagesAreInstalled
go.jetpack.io/devbox/internal/impl/packages.go:207
go.jetpack.io/devbox/internal/impl.(*Devbox).Add
go.jetpack.io/devbox/internal/impl/packages.go:97
go.jetpack.io/devbox/internal/boxcli.addCmdFunc
go.jetpack.io/devbox/internal/boxcli/add.go:68
go.jetpack.io/devbox/internal/boxcli.addCmd.func1
go.jetpack.io/devbox/internal/boxcli/add.go:42
github.com/spf13/cobra.(*Command).execute
github.com/spf13/cobra@v1.6.1/command.go:916
github.com/spf13/cobra.(*Command).ExecuteC
github.com/spf13/cobra@v1.6.1/command.go:1044
github.com/spf13/cobra.(*Command).Execute
github.com/spf13/cobra@v1.6.1/command.go:968
go.jetpack.io/devbox/internal/boxcli/midcobra.(*midcobraExecutable).Execute
go.jetpack.io/devbox/internal/boxcli/midcobra/midcobra.go:58
go.jetpack.io/devbox/internal/boxcli.Execute
go.jetpack.io/devbox/internal/boxcli/root.go:102
go.jetpack.io/devbox/internal/boxcli.Main
go.jetpack.io/devbox/internal/boxcli/root.go:123
main.main
go.jetpack.io/devbox/cmd/devbox/main.go:11
runtime.main
runtime/proc.go:250
runtime.goexit
runtime/asm_amd64.s:1598
[DEBUG] 2023/07/19 23:22:28 go.jetpack.io/devbox/internal/impl/dir.go:22: findProjectDir: path is
[DEBUG] 2023/07/19 23:22:28 go.jetpack.io/devbox/internal/impl/dir.go:66: finding devbox.json in dir: /home/tubo/Projects/radscheduler
Gotcha that's finding the libstdc file now, but it's not the right version. Let me do a little more debugging from there
Got the same problem. I cannot import python modules if I do not add the stdlib. But when I do that, other packages such as libsrvg are not working anymore. Unsetting LD_LIBRARY_PATH in the init hook resolve the problem for packages but breaks the import.
@aacebedo we're digging into this class of errors. Could you please share some files so we can repro it: devbox.json, devbox.lock, requirements.txt, and possibly some command to repro your specific error? While a good fix may take some time, we can try to advise you on how to get unblocked.
Feel free to pull it into a new issue to keep this one scoped to Tubo's scenario?
Thanks @savil for the answer.
here is my devbox.yaml
{
"packages": [
"python310@latest",
"python310Packages.pip@latest",
"drawio@21.6.1",
"inkscape@1.1.2",
"librsvg@2.52.5",
"xorg.xorgserver@latest",
"plantuml@1.2023.9",
"imagemagick@6.9.11-60",
"stdenv.cc.cc.lib",
"texlive.combined.scheme-full@2022.20221227"
],
"shell": {
"init_hook": [
". $VENV_DIR/bin/activate",
"pip install -q -r requirements.txt"
]
},
"nixpkgs": {
"commit": "a16f7eb56e88c8985fcc6eb81dabd6cade4e425a"
}
}
and the requirements file:
Sphinx==5.3.0
sphinx_rtd_theme==1.1.1
sphinxcontrib-plantuml==0.25
sphinxcontrib-svg2pdfconverter==1.2.1
sphinxcontrib-drawio==0.0.16
sphinxcontrib-bibtex==2.5.0
Pillow==9.3.0
matplotlib==3.7.2
If you try it you will see that python import matplotlib is working but not the srvg-convert
binary. If you add
unset LD_LIBRARY_PATH
to the init hook, srvg-convert
works but not the python import matplotlib with the same error as OP.
Thanks @aacebedo. I'm not quite able to repro because the drawio nix package appears to be broken, so it won't install (for my intel mac). I can try devbox generate dockerfile
and running it in the debian container, assuming the linux package is not broken. What OS are you on?
(I have to pause for a few hours for some personal work, but can look at it a bit later today)
Thanks ! I am using it on NixOS.
@aacebedo in a debian-container I can get a devbox shell
working.
I can import matplotlib
:
(.venv) (devbox) devbox@0616836e2023:/code$ cat main.py
import matplotlib
def main():
print("hello world")
main()
(.venv) (devbox) devbox@0616836e2023:/code$ python main.py
hello world
but running rsvg-convert
seems to complain...
/nix/store/0ccn204v5kds9i08x7plf4x644l6wm87-librsvg-2.52.5/bin/rsvg-convert
/nix/store/0ccn204v5kds9i08x7plf4x644l6wm87-librsvg-2.52.5/bin/rsvg-convert: /nix/store/4s21k8k7p1mfik0b33r2spq5hq7774k1-glibc-2.33-108/lib/libc.so.6: version `GLIBC_2.35' not found (required by /code/.devbox/nix/profile/default/lib/libgcc_s.so.1)
/nix/store/0ccn204v5kds9i08x7plf4x644l6wm87-librsvg-2.52.5/bin/rsvg-convert: /nix/store/4s21k8k7p1mfik0b33r2spq5hq7774k1-glibc-2.33-108/lib/libc.so.6: version `GLIBC_2.34' not found (required by /code/.devbox/nix/profile/default/lib/libgcc_s.so.1)
Is this the error you saw?
For some reason rsvg is not in PATH
for me...
It is exactly this issue. You can also try convert
that exhibit a similar issue.
you can try adding unset LD_LIBRARY_PATH to the init hook
@aacebedo I think changing the devbox.lock
to use this nixpkgs commit hash for stdenv.cc.cc.lib should unblock you:
"stdenv.cc.cc.lib": {
"resolved": "github:NixOS/nixpkgs/c6fd903606866634312e40cceb2caee8c0c9243f#stdenv.cc.cc.lib",
"source": "nixpkg"
},
We're investigating more principled fixes.
Hi, I tried the modification but without success. convert and rsvg-convert still does not start with libc.so.6 errors
@aacebedo I was discussing a similar issue with a user on Discord (is that you as well?).
In that case, something like this helped:
# main.py
import matplotlib
def main():
print("hello world")
main()
# requirements.txt
matplotlib==3.7.2
# devbox.json
{
"packages": [
"python310@latest",
"python310Packages.pip@latest",
"drawio@latest",
"librsvg@latest",
"github:nixos/nixpkgs/6b70761ea8c896aff8994eb367d9526686501860#stdenv.cc.cc.lib"
],
"shell": {
"init_hook": [
"export DEVBOX_DEBUG=1",
". $VENV_DIR/bin/activate",
"pip install -q -r requirements.txt"
]
},
"nixpkgs": {
"commit": "73e1976309fc789706b9f306407e9e7622a57d25"
}
}
# devbox.lock
{
"lockfile_version": "1",
"packages": {
"drawio@latest": {
"last_modified": "2023-09-10T10:53:27Z",
"resolved": "github:NixOS/nixpkgs/78058d810644f5ed276804ce7ea9e82d92bee293#drawio",
"source": "devbox-search",
"version": "21.6.8"
},
"github:nixos/nixpkgs/6b70761ea8c896aff8994eb367d9526686501860#stdenv.cc.cc.lib": {},
"librsvg@latest": {
"last_modified": "2023-09-10T10:53:27Z",
"resolved": "github:NixOS/nixpkgs/78058d810644f5ed276804ce7ea9e82d92bee293#librsvg",
"source": "devbox-search",
"version": "2.56.3"
},
"python310@latest": {
"last_modified": "2023-02-24T18:08:35Z",
"plugin_version": "0.0.1",
"resolved": "github:NixOS/nixpkgs/806075be2bdde71895359ed18cb530c4d323e6f6#python3",
"source": "devbox-search",
"version": "3.10.9"
},
"python310Packages.pip@latest": {
"last_modified": "2023-09-10T10:53:27Z",
"plugin_version": "0.0.1",
"resolved": "github:NixOS/nixpkgs/78058d810644f5ed276804ce7ea9e82d92bee293#python310Packages.pip",
"source": "devbox-search",
"version": "23.2.1"
}
}
The reasoning is:
Original error was: /nix/store/lqz6hmd86viw83f9qll2ip87jhb7p1ah-glibc-2.35-224/lib/libc.so.6: version 'GLIBC_2.36' not found (required by /tmp/test/.devbox/nix/profile/default/lib/libstdc++.so.6)
stdenv.cc.cc.lib
is expecting a GLIBC 2.36, but the code executed by the python binary (either directly, or indirectly via the matplotlib -> numpy dependencies) is linked against GLIBC 2.35.nixpkgs/6b70761ea8c896aff8994eb367d9526686501860#glibc
github:nixos/nixpkgs/6b70761ea8c896aff8994eb367d9526686501860#stdenv.cc.cc.lib
@aacebedo I was discussing a similar issue with a user on Discord (is that you as well?).
In that case, something like this helped:
# main.py import matplotlib def main(): print("hello world") main() # requirements.txt matplotlib==3.7.2 # devbox.json { "packages": [ "python310@latest", "python310Packages.pip@latest", "drawio@latest", "librsvg@latest", "github:nixos/nixpkgs/6b70761ea8c896aff8994eb367d9526686501860#stdenv.cc.cc.lib" ], "shell": { "init_hook": [ "export DEVBOX_DEBUG=1", ". $VENV_DIR/bin/activate", "pip install -q -r requirements.txt" ] }, "nixpkgs": { "commit": "73e1976309fc789706b9f306407e9e7622a57d25" } } # devbox.lock { "lockfile_version": "1", "packages": { "drawio@latest": { "last_modified": "2023-09-10T10:53:27Z", "resolved": "github:NixOS/nixpkgs/78058d810644f5ed276804ce7ea9e82d92bee293#drawio", "source": "devbox-search", "version": "21.6.8" }, "github:nixos/nixpkgs/6b70761ea8c896aff8994eb367d9526686501860#stdenv.cc.cc.lib": {}, "librsvg@latest": { "last_modified": "2023-09-10T10:53:27Z", "resolved": "github:NixOS/nixpkgs/78058d810644f5ed276804ce7ea9e82d92bee293#librsvg", "source": "devbox-search", "version": "2.56.3" }, "python310@latest": { "last_modified": "2023-02-24T18:08:35Z", "plugin_version": "0.0.1", "resolved": "github:NixOS/nixpkgs/806075be2bdde71895359ed18cb530c4d323e6f6#python3", "source": "devbox-search", "version": "3.10.9" }, "python310Packages.pip@latest": { "last_modified": "2023-09-10T10:53:27Z", "plugin_version": "0.0.1", "resolved": "github:NixOS/nixpkgs/78058d810644f5ed276804ce7ea9e82d92bee293#python310Packages.pip", "source": "devbox-search", "version": "23.2.1" } }
The reasoning is:
- The error seen was:
Original error was: /nix/store/lqz6hmd86viw83f9qll2ip87jhb7p1ah-glibc-2.35-224/lib/libc.so.6: version 'GLIBC_2.36' not found (required by /tmp/test/.devbox/nix/profile/default/lib/libstdc++.so.6)
- What's happening is that that the
stdenv.cc.cc.lib
is expecting a GLIBC 2.36, but the code executed by the python binary (either directly, or indirectly via the matplotlib -> numpy dependencies) is linked against GLIBC 2.35.- I searched https://www.nixhub.io/packages/glibc and version 2.35-224 is from
nixpkgs/6b70761ea8c896aff8994eb367d9526686501860#glibc
- So, to try fixing it I replaced stdenv.cc.cc.lib with
github:nixos/nixpkgs/6b70761ea8c896aff8994eb367d9526686501860#stdenv.cc.cc.lib
Yes it is me. I thought I could find some help from the community on it. Still I am facing other libc errors on other software installed with devbox so I try to investigate this with the clue about the libc version change you gave me.
@aacebedo we've been researching a fix for your issue. In this repository https://github.com/savil/devbox-issue-1276, I have a devbox.json
and some local flake.nix
files that illustrate an approach to solving this problem. The README explains a bit about what its doing.
Could you please try it out in your project, and let us know if this approach works?
If it does, we can build this as a feature in Devbox. Ideally, it should work with minimal user work i.e. no need to manually write your own flake.nix
.
@aacebedo we've been researching a fix for your issue. In this repository https://github.com/savil/devbox-issue-1276, I have a
devbox.json
and some localflake.nix
files that illustrate an approach to solving this problem. The README explains a bit about what its doing.Could you please try it out in your project, and let us know if this approach works?
If it does, we can build this as a feature in Devbox. Ideally, it should work with minimal user work i.e. no need to manually write your own
flake.nix
.
Thanks for the work !
Tried it and convert
is still exhibiting the issue :(
@aacebedo That's a bummer. Sorry to hear that. A couple of requests:
Request 1: repro code I thought we were running the same code as you, so am surprised it is not working. It would help if you could share a github repository with the project code you are trying to run, which exhibits this issue. That would help us debug the exact code you're running.
Request 2: try Devbox 0.8.0-dev's glibc_patch feature In the upcoming Devbox release (release notes), @gcurtis implemented this approach (with some details modified) as a product feature.
export DEVBOX_USE_VERSION=0.8.0-dev
.packages
in devbox.json to a be json map. And set patch_glibc: true
for python and librsvg. Refer to the PR Summary of as an example.virtenv
script in that PR's example.It would be great if you could try that out, and let us know if it works or not for you. Thanks!
@aacebedo That's a bummer. Sorry to hear that. A couple of requests:
Request 1: repro code I thought we were running the same code as you, so am surprised it is not working. It would help if you could share a github repository with the project code you are trying to run, which exhibits this issue. That would help us debug the exact code you're running.
Request 2: try Devbox 0.8.0-dev's glibc_patch feature In the upcoming Devbox release (release notes), @gcurtis implemented this approach (with some details modified) as a product feature.
- You can use this version of devbox by setting
export DEVBOX_USE_VERSION=0.8.0-dev
.- You'll need to modify
packages
in devbox.json to a be json map. And setpatch_glibc: true
for python and librsvg. Refer to the PR Summary of as an example.- You'll also need to initialize the python virtualenv as shown in the
virtenv
script in that PR's example.It would be great if you could try that out, and let us know if it works or not for you. Thanks!
I cloned the devbox-issue-1276
repo and ran devbox shell
in it. Then I ran convert
and saw the issue :(
I am running devbox 0.7.1 but I'll give a try to the upcoming release as you adviced.
I cloned the devbox-issue-1276 repo and ran devbox shell in it. Then I ran convert and saw the issue :(
@aacebedo 😱 oh wow. That is odd. Its been a while, but IIRC I'd been running the Dockerfile in that repo to test it out on a debian-slim image (since I have a Mac; this issue affects linux). I'll have to retry my steps in case something changed so that it is no longer working.
@aacebedo sorry for the delay. After trying out the steps, I think I understand the problem. In my prototype, I've patched python and librsvg
using the local flake. Those do work.
You are trying convert
that came from the imagemagick
nix package. You'll need to patch that via a local flake (as I illustrated with python or librsvg). We don't patch all packages automatically to be conservative, as I explain at the end of the README of https://github.com/savil/devbox-issue-1276, and until we get some validating feedback from real world projects.
Or better, I'd suggest using Devbox 0.8.0-dev
and modifying the devbox.json to specify patch_glibc:true
for whichever packages are hitting the libc errors. Let us know if that works, and thanks for pursuing this with us!
@savil thanks a lot to take a look to this !
Ok I'll try the 0.8.0-dev to check this out
@aacebedo sorry for the delay. After trying out the steps, I think I understand the problem. In my prototype, I've patched python and
librsvg
using the local flake. Those do work.You are trying
convert
that came from theimagemagick
nix package. You'll need to patch that via a local flake (as I illustrated with python or librsvg). We don't patch all packages automatically to be conservative, as I explain at the end of the README of https://github.com/savil/devbox-issue-1276, and until we get some validating feedback from real world projects.Or better, I'd suggest using Devbox
0.8.0-dev
and modifying the devbox.json to specifypatch_glibc:true
for whichever packages are hitting the libc errors. Let us know if that works, and thanks for pursuing this with us!
Ok, so I checked out the v0.8.0-dev
, built it (go build ./cmd/devbox
), ran a sudo nix-collect-garbage -d
.
I exported DEVBOX_USE_VERSION=0.8.0-dev
and finally did a devbox shell
with the following file:
{
"packages": {
"imagemagick": {
"version": "6.9.11-60",
"patch_glibc": true
},
"librsvg": {
"version": "2.52.5"
}
}
}
and convert
still does not work :(
convert: /nix/store/3wa1xwnfv8ada1za1r8m4vmsiz1jifqq-glibc-2.32-35/lib/libc.so.6: version `GLIBC_2.33' not found (required by /tmp/devbox-issue-1276/.devbox/nix/profile/default/lib/librsvg-2.so.2)
convert: /nix/store/3wa1xwnfv8ada1za1r8m4vmsiz1jifqq-glibc-2.32-35/lib/libc.so.6: version `GLIBC_2.33' not found (required by /nix/store/nw2gv9l8lzi4scbddbg1vfvivzcpvag3-harfbuzz-3.2.0/lib/libharfbuzz.so.0)
@aacebedo indeed, I think something is not working correctly. I can repro the error you are seeing. We're looking into it...
@aacebedo thank you ! @gcurtis and I just looked at this. We added patch_glibc: true
to librsvg
.
This exposed a couple of issues:
patch_glibc
was only working for one package. The fix for that is straightforward.convert
. The error has to do with a libpango
not finding a g_memdup2
symbol. The root cause of that appears to be that there's a version mismatch with a different library called glib (https://gitlab.gnome.org/GNOME/glib/). We need to investigate a good fix for this, but sadly it'll take a bit of time :(. Will circle back when we have some more news.@aacebedo thank you ! @gcurtis and I just looked at this. We added
patch_glibc: true
tolibrsvg
.This exposed a couple of issues:
- A bug in the current implementation. The
patch_glibc
was only working for one package. The fix for that is straightforward.- We still do run into an error executing
convert
. The error has to do with alibpango
not finding ag_memdup2
symbol. The root cause of that appears to be that there's a version mismatch with a different library called glib (https://gitlab.gnome.org/GNOME/glib/). We need to investigate a good fix for this, but sadly it'll take a bit of time :(. Will circle back when we have some more news.
Thanks to you both looking into this ! I'll continue to watch the issue and test fixes if it can help to solve this issue.
I have the same issue. I was using poetry command after installing it with devbox add poetry. Before devbox, when using nix flake, I had to wrap poetry with this:
poetry = pkgs.symlinkJoin {
name = "poetry";
paths = [ pkgs.poetry ];
buildInputs = [ pkgs.makeWrapper ];
postBuild = ''
wrapProgram $out/bin/poetry --set LD_LIBRARY_PATH ${lib.makeLibraryPath [ pksgs.stdenv.cc.cc.lib ]}
'';
};
ciDeps = with pkgs; [
cmake
] ++ [ poetry ];
Same problem here. Unsetting LD_LIBRARY_PATH
does not solve the issue; neither does devbox add stdenv.cc.cc.lib
(or any combination of the two).
I also tried managing my Python dependencies by running devbox add python@3.11
and following the instructions (installing packages with pip
instead of poetry
).
EDIT: Solved by setting LD_LIBRARY_PATH
to <my-project-path>/.devbox/nix/profile/default/lib/
.
EDIT: Not quite solved: My script now works, but:
python3 -c "import numpy"
fails with:
(outerbounds-examples-py3.11) ❯ p3 -c 'import numpy'
Traceback (most recent call last):
File "/home/auguste/Desktop/outerbounds-examples/.venv/lib/python3.11/site-packages/numpy/core/__init__.py", line 24, in <module>
from . import multiarray
File "/home/auguste/Desktop/outerbounds-examples/.venv/lib/python3.11/site-packages/numpy/core/multiarray.py", line 10, in <module>
from . import overrides
File "/home/auguste/Desktop/outerbounds-examples/.venv/lib/python3.11/site-packages/numpy/core/overrides.py", line 8, in <module>
from numpy.core._multiarray_umath import (
ImportError: libz.so.1: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/auguste/Desktop/outerbounds-examples/.venv/lib/python3.11/site-packages/numpy/init.py", line 130, in
IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
Importing the numpy C-extensions failed. This error can happen for many reasons, often due to issues with your setup or how NumPy was installed.
We have compiled some common reasons and troubleshooting tips at:
https://numpy.org/devdocs/user/troubleshooting-importerror.html
Please note and check the following:
and make sure that they are the versions you expect. Please carefully study the documentation linked above for further help.
Original error was: libz.so.1: cannot open shared object file: No such file or directory
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "
although I think it might've failed even before the fix.
2. All `nix` commands now fail with
nix: /home/auguste/Desktop/outerbounds-examples/.devbox/nix/profile/default/lib/libstdc++.so.6: version GLIBCXX_3.4.31' not found (required by nix) nix: /home/auguste/Desktop/outerbounds-examples/.devbox/nix/profile/default/lib/libstdc++.so.6: version
GLIBCXX_3.4.32' not found (required by nix)
nix: /home/auguste/Desktop/outerbounds-examples/.devbox/nix/profile/default/lib/libstdc++.so.6: version GLIBCXX_3.4.32' not found (required by /nix/store/v7gdmdc9yhx3ngh840xx5kr46840s73b-nix-2.18.2/lib/libnixexpr.so) nix: /home/auguste/Desktop/outerbounds-examples/.devbox/nix/profile/default/lib/libstdc++.so.6: version
GLIBCXX_3.4.31' not found (required by /nix/store/v7gdmdc9yhx3ngh840xx5kr46840s73b-nix-2.18.2/lib/libnixexpr.so)
nix: /home/auguste/Desktop/outerbounds-examples/.devbox/nix/profile/default/lib/libstdc++.so.6: version GLIBCXX_3.4.31' not found (required by /nix/store/v7gdmdc9yhx3ngh840xx5kr46840s73b-nix-2.18.2/lib/libnixmain.so) nix: /home/auguste/Desktop/outerbounds-examples/.devbox/nix/profile/default/lib/libstdc++.so.6: version
GLIBCXX_3.4.32' not found (required by /nix/store/v7gdmdc9yhx3ngh840xx5kr46840s73b-nix-2.18.2/lib/libnixmain.so)
nix: /home/auguste/Desktop/outerbounds-examples/.devbox/nix/profile/default/lib/libstdc++.so.6: version GLIBCXX_3.4.32' not found (required by /nix/store/v7gdmdc9yhx3ngh840xx5kr46840s73b-nix-2.18.2/lib/libnixfetchers.so) nix: /home/auguste/Desktop/outerbounds-examples/.devbox/nix/profile/default/lib/libstdc++.so.6: version
GLIBCXX_3.4.31' not found (required by /nix/store/v7gdmdc9yhx3ngh840xx5kr46840s73b-nix-2.18.2/lib/libnixfetchers.so)
nix: /home/auguste/Desktop/outerbounds-examples/.devbox/nix/profile/default/lib/libstdc++.so.6: version GLIBCXX_3.4.31' not found (required by /nix/store/v7gdmdc9yhx3ngh840xx5kr46840s73b-nix-2.18.2/lib/libnixstore.so) nix: /home/auguste/Desktop/outerbounds-examples/.devbox/nix/profile/default/lib/libstdc++.so.6: version
GLIBCXX_3.4.32' not found (required by /nix/store/v7gdmdc9yhx3ngh840xx5kr46840s73b-nix-2.18.2/lib/libnixstore.so)
nix: /home/auguste/Desktop/outerbounds-examples/.devbox/nix/profile/default/lib/libstdc++.so.6: version GLIBCXX_3.4.31' not found (required by /nix/store/v7gdmdc9yhx3ngh840xx5kr46840s73b-nix-2.18.2/lib/libnixutil.so) nix: /home/auguste/Desktop/outerbounds-examples/.devbox/nix/profile/default/lib/libstdc++.so.6: version
GLIBCXX_3.4.32' not found (required by /nix/store/v7gdmdc9yhx3ngh840xx5kr46840s73b-nix-2.18.2/lib/libnixutil.so)
nix: /home/auguste/Desktop/outerbounds-examples/.devbox/nix/profile/default/lib/libstdc++.so.6: version GLIBCXX_3.4.32' not found (required by /nix/store/v7gdmdc9yhx3ngh840xx5kr46840s73b-nix-2.18.2/lib/libnixcmd.so) nix: /home/auguste/Desktop/outerbounds-examples/.devbox/nix/profile/default/lib/libstdc++.so.6: version
GLIBCXX_3.4.31' not found (required by /nix/store/v7gdmdc9yhx3ngh840xx5kr46840s73b-nix-2.18.2/lib/libnixcmd.so)
nix: /home/auguste/Desktop/outerbounds-examples/.devbox/nix/profile/default/lib/libstdc++.so.6: version GLIBCXX_3.4.32' not found (required by /nix/store/dgc42gd76af2syp7fk5d9mv2abqrggkg-aws-sdk-cpp-1.11.207/lib/libaws-cpp-sdk-transfer.so) nix: /home/auguste/Desktop/outerbounds-examples/.devbox/nix/profile/default/lib/libstdc++.so.6: version
GLIBCXX_3.4.32' not found (required by /nix/store/dgc42gd76af2syp7fk5d9mv2abqrggkg-aws-sdk-cpp-1.11.207/lib/libaws-cpp-sdk-s3.so)
nix: /home/auguste/Desktop/outerbounds-examples/.devbox/nix/profile/default/lib/libstdc++.so.6: version GLIBCXX_3.4.32' not found (required by /nix/store/dgc42gd76af2syp7fk5d9mv2abqrggkg-aws-sdk-cpp-1.11.207/lib/libaws-cpp-sdk-core.so) nix: /home/auguste/Desktop/outerbounds-examples/.devbox/nix/profile/default/lib/libstdc++.so.6: version
GLIBCXX_3.4.32' not found (required by /nix/store/a88l22177h3mb4ifiy734mr71c40pfxp-aws-crt-cpp-0.24.7/lib/libaws-crt-cpp.so)
EDIT: Importing numpy does not fail when done in IPython (installed through devbox). Uh, what?
I ended up using a shell.nix
instead, using nixpkgs unstable rather than 23.11, and that seemed to work alright. I'll try devbox again when I have the time.
Current Behavior (bug) When using Python packages via
requirements.txt
, this time the package isortools
.This bug was related to #710 and #760.
LD_LIBRARY_PATH
is/home/tubo/Sync/Projects/radscheduler/.devbox/nix/profile/default/lib
Content of
LD_LIBRARY_PATH
is:Error messages:
Expected Behavior (fix) Running
pytest
should not have this error.Additional context
OS: KDE Neon (Ubuntu 22.04) Devbox version:
0.5.5
to0.5.7
devbox.json
:requirements.txt
: