how is about EGFR or other genes complex variants

jfarek / xatlas

BSD 3-Clause "New" or "Revised" License

29 stars 3 forks source link

how is about EGFR or other genes complex variants #7

Open asmlgkj opened 7 months ago

asmlgkj commented 7 months ago

Thanks a lot for this great tool. I have some puzzles wanting for help 1 Can it be used for somatic 2 can it call EGFR or other genes complex variants

jfarek commented 7 months ago

Hi,

xAtlas was trained against NIST high-confidence benchmark germline variant call sets. We have not tested using xAtlas for somatic variant calling, but it should be able to call variants for EGFR and other genes from germline sequences.