Identify high quality RNA-seq samples in SRA.

[jfear]

Story

I need a set of high quality samples from SRA. These samples should be RNA-seq and have the majority of reads aligning uniquely to the D. mel genome. To identify RNA-seq samples, I need a set of criteria that separate RNA-seq samples from other types of sequencing technologies.

Questions and Tasks (https://workflowy.com/s/DzPZ.MLSuWfXtiU)

• [x] How many highly stranded datasets are there?
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List of criteria

• [ ] Strandedness
• [ ]

Definition of done

• [ ] Have a list of criteria which to separate high quality samples.
• [ ] Have code to aggregate these criteria.
• [ ] Have code to summarize these criteria.
• [ ] Have figure(s) demonstrating these criteria.
• [ ] Written explanation of methods and results for sample selection.