Refactor aln wf - Githubissues

jfear / ncbi_remap

This is the drosSRA project, where we are remapping all Drosophila melanogaster RNA-seq data to FlyBase release 6 and updating annotations.

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Refactor aln wf #60

Closed jfear closed 7 years ago

jfear commented 7 years ago

What does it do?

Refactors the alignment workflow
- Removes dependency on the mongo database in favor to a hdf5 queue.
- Changes to use flat files for strand and layout flags.

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