Part of the SRA project is to classify samples based on the technology (i.e., RNA-seq, ChIP-seq, DNA-seq); while most of the metadata is correct there are instances where a sample is labeled with the wrong technology. Using this list from the SRA I want to intersect samples that are classified as ChIP-seq.
Questions and Tasks
[ ] Intersect with samples classification from SRA.
[ ] Filter out ChIP-seq.
Definition of done
[ ] List of SRXs that appear to be ChIP-seq from the SRA project.
Story
Part of the SRA project is to classify samples based on the technology (i.e., RNA-seq, ChIP-seq, DNA-seq); while most of the metadata is correct there are instances where a sample is labeled with the wrong technology. Using this list from the SRA I want to intersect samples that are classified as ChIP-seq.
Questions and Tasks
Definition of done