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jfear / s2rnai

S2 Cell RNAi Project
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What is the distribution of q-values in the dmmpmm dataset? #34

Closed jfear closed 7 years ago

jfear commented 7 years ago

To Do [ ] Parse dmmpmm2009 gtf file and pull out TF and q-values. [ ] For each gene plot the distribution of q-values (if there are >100 hits).

jfear commented 7 years ago

The GFF includes all of the data (no filters), you download this from biowulf.

biowulf:/scratch/fearjm/fimo/motif_alignments_dmmpmm2009_dm6.gff

isabelleberger commented 7 years ago

See notebook (distribution_qvals_dmmpmm). Most are high (close to 1), other than Trl which has values under the cutoff. Decided to focus on Med, hb, sd because their distributions come closest to the cutoff value 0.05.