dependence du metawrap assemblage pipeline à la présence de NCBI_nt et NCBI_tax

[jorondo1]

j'ai flusher mes logs malheureusement, mais le tail ressemblait à :

+ singularity exec --writable-tmpfs -e -W /localscratch/ronj2303.2417735.0 -B /localscratch/ronj2303.2417735.0:/out -B /nfs3_ib/nfs-ip34/fast/def-ilafores/checkm_db:/checkm -B /nfs3_ib/nfs-ip34/fast/def-ilafores/NCBI_nt:/NCBI_nt -B /nfs3_ib/nfs-ip34/fast/def-ilafores/NCBI_tax:/NCBI_tax /localscratch/ronj2303.2417735.0/metawrap.1.3.sif metaWRAP assembly --metaspades --megahit -m 240 -t 48 -1 /out/22_paired_sorted_1.fastq -2 /out/22_paired_sorted_2.fastq -o /out/assembly/
WARNING: skipping mount of /nfs3_ib/nfs-ip34/fast/def-ilafores/NCBI_nt: stat /nfs3_ib/nfs-ip34/fast/def-ilafores/NCBI_nt: no such file or directory
FATAL:   container creation failed: mount hook function failure: mount /nfs3_ib/nfs-ip34/fast/def-ilafores/NCBI_nt->/NCBI_nt error: while mounting /nfs3_ib/nfs-ip34/fast/def-ilafores/NCBI_nt: mount source /nfs3_ib/nfs-ip34/fast/def-ilafores/NCBI_nt doesn't exist
++ __error_handing__ 255
++ local last_status_code=255
++ rm -f /nfs3_ib/nfs-ip34/home/def-ilafores/analysis/projet_PROVID19/Saliva/coassembly//.throttle/throttle.start.22.txt
++ rm -f /nfs3_ib/nfs-ip34/home/def-ilafores/analysis/projet_PROVID19/Saliva/coassembly//.throttle/throttle.end.22.txt
++ exit 255
done metawrap pipeline on 22

[jflucier]

patch done! commit ef48692 released sur ip34