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jfnavarro / PrimeTV2

A tool to visualize reconciled trees
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Boost dependencies #15

Closed arvestad closed 10 years ago

arvestad commented 10 years ago

The boost dependencies are more than indicated in the INSTALL file. I have not been able to deduce what is missing, but when running cmake, it complains that "some, but not all" boost libraries are present. Specifically, it mentions "boost-system" as not being present, but I solved it by (on ubuntu) issuing: sudo apt-get install libboost-all-dev

jfnavarro commented 10 years ago

That is right. I have updated the INSTALL file.

arvestad commented 10 years ago

Thanks!

I was going crazy trying to compile on Mac. Could not make it work in Xcode or Qt. Worked on the command line, but then I could not get the debugger to work.

Now I am in a virtual machine, with ubuntu, and it actually now compiles. 

L

On 26 Nov 2013, at 16:39, José Carlos Fernández Navarro notifications@github.com wrote:

That is right. I have updated the INSTALL file.

— Reply to this email directly or view it on GitHub.

arvestad commented 10 years ago

AAAaaawa! I have spent far too much time on debugging, when the problem is that I put gene and species tree in the wrong order!

Will try again on Mac tomorrow to see what happens.

I have looked at the result from “twist and turn” (option -R), and it does not work as it is supposed to. Presumably, the code in that function does not affect the new layout code? I dumped a screenshot showing this. There are some really simple clades where a simple sorting of the gene vertices mapped to speciation nodes would help a lot.

L

On 26 Nov 2013, at 16:43, Lars Arvestad lars.arvestad@scilifelab.se wrote:

Thanks!

I was going crazy trying to compile on Mac. Could not make it work in Xcode or Qt. Worked on the command line, but then I could not get the debugger to work.

Now I am in a virtual machine, with ubuntu, and it actually now compiles.

L

On 26 Nov 2013, at 16:39, José Carlos Fernández Navarro notifications@github.com wrote:

That is right. I have updated the INSTALL file.

— Reply to this email directly or view it on GitHub.