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jfnavarro / PrimeTV2

A tool to visualize reconciled trees
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Pre-computed LGT scenarios #2

Closed arvestad closed 12 years ago

arvestad commented 13 years ago

It is great to have primetv compute possible lgt scenarios, but much like the duplication-only case, it is important to be able to get a scenario from another program (or to construct it by hand) and visualize it. Right now, we have option -r for saying "use the reconciliation embedded in the input gene tree" and I would like that option to also know about LGT.

jfnavarro commented 12 years ago

As it is now, the option -X can load a pre-computed LGT scenario. The file has to have the following format :

Transfer edges Numbers: (9,2,0.12) (1,3,0.2)

Where 9 is origin, 2 destiny and 0.12 time.

Ideally, the time will be used to compute the coordinates of the LGT edges.