Closed GoogleCodeExporter closed 9 years ago
This would be easy to implement, but I need to decide whether it is worth
adding this feature since there are already so many options. Will think about
it.
Original comment by marcel.m...@tu-dortmund.de
on 15 May 2014 at 10:36
Thanks for your consideration! And the more I read about trimming the 5' end of
reads for RNAseq data, the less critical I think it is. I'll do some testing
using other software that allows such fixed-length trimming to see if it makes
a difference in the final analysis.
Original comment by jkgren...@gmail.com
on 16 May 2014 at 12:52
I've just implemented a new option named --cut, which can be abbreviated to -u.
It allows one to trim a given number of bases from the beginning or end of each
read. See the section in the README:
https://github.com/marcelm/cutadapt/#removing-bases-from-the-beginning-or-end-of
-each-read
It's even a bit faster than fastx_trimmer with the -f option.
Original comment by marcel.m...@tu-dortmund.de
on 27 May 2014 at 4:14
Thank you for this enhancement!
Original comment by jkgren...@gmail.com
on 27 May 2014 at 8:37
Hi, Is it possible to download v1.5 that includes the --cut option? What do I
need to do to update to v1.5?
Thanks in advance!
Original comment by jkgren...@gmail.com
on 18 Jun 2014 at 6:42
You can go to https://github.com/marcelm/cutadapt/ and click on the 'Download
ZIP' button on the right-hand side in order to get the current development
version. You will have to follow the installation instructions in the README,
though.
Original comment by marcel.m...@tu-dortmund.de
on 19 Jun 2014 at 12:41
Implemented in cutadapt 1.5, which was released today.
Original comment by marcel.m...@tu-dortmund.de
on 5 Aug 2014 at 11:40
Original issue reported on code.google.com by
jkgren...@gmail.com
on 13 May 2014 at 8:48