cutadapt-1.7 build fails

[GoogleCodeExporter]

This is what happened on my system

$ python setup.py build
Traceback (most recent call last):
  File "setup.py", line 91, in <module>
    extensions = cythonize_if_necessary(extensions)
  File "setup.py", line 64, in cythonize_if_necessary
    elif out_of_date(extensions):
  File "setup.py", line 35, in out_of_date
    os.path.getmtime(pyx) > os.path.getmtime(csource)):
  File "/usr/lib/python2.7/genericpath.py", line 54, in getmtime
    return os.stat(filename).st_mtime
OSError: [Errno 2] No such file or directory: 'cutadapt/_align.pyx'

Original issue reported on code.google.com by giuseppe...@gmail.com on 25 Nov 2014 at 6:55

[GoogleCodeExporter]

You are right, a change I made to the setup.py file caused the .pyx files not 
to be included anymore (which wasn't visible during testing).

I've uploaded cutadapt 1.7.1, which includes the files. Please tell me if it 
works. Thanks for reporting this!

Original comment by marcel.m...@tu-dortmund.de on 25 Nov 2014 at 7:09

• Changed state: Accepted

[GoogleCodeExporter]

I was just wrestling with this issue on my CentOS 6.6 build machine and can 
confirm that 1.7.1 now builds fine.

Original comment by sh...@biomatters.com on 25 Nov 2014 at 7:16

[GoogleCodeExporter]

Thanks for the feedback and sorry for the trouble. I've updated the homepage to 
point people to the 1.7.1 release.

Original comment by marcel.m...@tu-dortmund.de on 26 Nov 2014 at 9:51

• Changed state: Fixed

[GoogleCodeExporter]

I confirm that now it builds fine. Thank you!

Original comment by giuseppe...@gmail.com on 26 Nov 2014 at 10:04