not compiling - Githubissues

Hello Team,

Does it compile on Linux or MacOS, I cannot compile both by runnning cargo build --release after clone minimap2 under minimap2-sys folder:

The following warnings were emitted during compilation:

warning: minimap2/hit.c: In function 'mm_gen_regs': warning: minimap2/hit.c:74:18: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] warning: 74 | r = (mm_reg1_t)calloc(n_u, sizeof(mm_reg1_t)); warning: | ^~~~~~~~~~ warning: In file included from /usr/include/bits/string2.h:1296, warning: from /usr/include/string.h:633, warning: from minimap2/hit.c:1: warning: /usr/include/stdlib.h:467:14: note: in a call to allocation function 'calloc' declared here warning: 467 | extern void calloc (size_t __nmemb, size_t __size) warning: | ^~

error: failed to run custom build command for minimap2-sys v0.1.6

Caused by: process didn't exit successfully: /storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-81c7d28179994891/build-script-build (exit status: 101) --- stdout "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out" cargo:rerun-if-changed=minimap2/.c cargo:rerun-if-env-changed=ZLIB_NO_PKG_CONFIG cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-unknown-linux-gnu cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_unknown_linux_gnu cargo:rerun-if-env-changed=HOST_PKG_CONFIG cargo:rerun-if-env-changed=PKG_CONFIG cargo:rerun-if-env-changed=ZLIB_STATIC cargo:rerun-if-env-changed=ZLIB_DYNAMIC cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH cargo:rerun-if-env-changed=PKG_CONFIG_PATH cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR cargo:rerun-if-env-changed=SYSROOT cargo:rerun-if-env-changed=ZLIB_STATIC cargo:rerun-if-env-changed=ZLIB_DYNAMIC cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC cargo:rustc-link-search=native=/usr/lib64 cargo:rustc-link-lib=z cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-unknown-linux-gnu cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_unknown_linux_gnu cargo:rerun-if-env-changed=HOST_PKG_CONFIG cargo:rerun-if-env-changed=PKG_CONFIG cargo:rerun-if-env-changed=ZLIB_STATIC cargo:rerun-if-env-changed=ZLIB_DYNAMIC cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH cargo:rerun-if-env-changed=PKG_CONFIG_PATH cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR cargo:rustc-link-lib=m cargo:rustc-link-lib=pthread Compiling... TARGET = Some("x86_64-unknown-linux-gnu") OPT_LEVEL = Some("3") HOST = Some("x86_64-unknown-linux-gnu") cargo:rerun-if-env-changed=CC_x86_64-unknown-linux-gnu CC_x86_64-unknown-linux-gnu = None cargo:rerun-if-env-changed=CC_x86_64_unknown_linux_gnu CC_x86_64_unknown_linux_gnu = None cargo:rerun-if-env-changed=HOST_CC HOST_CC = None cargo:rerun-if-env-changed=CC CC = Some("/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc") cargo:rerun-if-env-changed=CFLAGS_x86_64-unknown-linux-gnu CFLAGS_x86_64-unknown-linux-gnu = None cargo:rerun-if-env-changed=CFLAGS_x86_64_unknown_linux_gnu CFLAGS_x86_64_unknown_linux_gnu = None cargo:rerun-if-env-changed=HOST_CFLAGS HOST_CFLAGS = None cargo:rerun-if-env-changed=CFLAGS CFLAGS = None cargo:rerun-if-env-changed=CRATE_CC_NO_DEFAULTS CRATE_CC_NO_DEFAULTS = None DEBUG = Some("false") running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/align.o" "-c" "minimap2/align.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/bseq.o" "-c" "minimap2/bseq.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/esterr.o" "-c" "minimap2/esterr.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/format.o" "-c" "minimap2/format.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/hit.o" "-c" "minimap2/hit.c" cargo:warning=minimap2/hit.c: In function 'mm_gen_regs': cargo:warning=minimap2/hit.c:74:18: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] cargo:warning= 74 | r = (mm_reg1_t)calloc(n_u, sizeof(mm_reg1_t)); cargo:warning= | ^~~~~~~~~~ cargo:warning=In file included from /usr/include/bits/string2.h:1296, cargo:warning= from /usr/include/string.h:633, cargo:warning= from minimap2/hit.c:1: cargo:warning=/usr/include/stdlib.h:467:14: note: in a call to allocation function 'calloc' declared here cargo:warning= 467 | extern void *calloc (size_t __nmemb, size_t __size) cargo:warning= | ^~ exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/index.o" "-c" "minimap2/index.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/kalloc.o" "-c" "minimap2/kalloc.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/ksw2_dispatch.o" "-c" "minimap2/ksw2_dispatch.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/ksw2_extd2_sse.o" "-c" "minimap2/ksw2_extd2_sse.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/ksw2_exts2_sse.o" "-c" "minimap2/ksw2_exts2_sse.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/ksw2_extz2_sse.o" "-c" "minimap2/ksw2_extz2_sse.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/ksw2_ll_sse.o" "-c" "minimap2/ksw2_ll_sse.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/kthread.o" "-c" "minimap2/kthread.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/lchain.o" "-c" "minimap2/lchain.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/map.o" "-c" "minimap2/map.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/misc.o" "-c" "minimap2/misc.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/options.o" "-c" "minimap2/options.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/pe.o" "-c" "minimap2/pe.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/sdust.o" "-c" "minimap2/sdust.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/seed.o" "-c" "minimap2/seed.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/sketch.o" "-c" "minimap2/sketch.c" exit status: 0 running: "/usr/local/pace-apps/spack/packages/linux-rhel7-x86_64/gcc-4.8.5/gcc-10.3.0-o57x6h2gubo7bzh7evmy4mvibdqrlghr/bin/gcc" "-O3" "-ffunction-sections" "-fdata-sections" "-fPIC" "-m64" "-static" "-I" "minimap2" "-DHAVE_KALLOC" "-O2" "-lm" "-lz" "-lpthread" "-o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/splitidx.o" "-c" "minimap2/splitidx.c" exit status: 0 cargo:rerun-if-env-changed=AR_x86_64-unknown-linux-gnu AR_x86_64-unknown-linux-gnu = None cargo:rerun-if-env-changed=AR_x86_64_unknown_linux_gnu AR_x86_64_unknown_linux_gnu = None cargo:rerun-if-env-changed=HOST_AR HOST_AR = None cargo:rerun-if-env-changed=AR AR = None running: "ar" "cq" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/liblibminimap.a" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/align.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/bseq.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/esterr.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/format.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/hit.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/index.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/kalloc.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/ksw2_dispatch.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/ksw2_extd2_sse.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/ksw2_exts2_sse.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/ksw2_extz2_sse.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/ksw2_ll_sse.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/kthread.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/lchain.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/map.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/misc.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/options.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/pe.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/sdust.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/seed.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/sketch.o" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/minimap2/splitidx.o" exit status: 0 running: "ar" "s" "/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out/liblibminimap.a" exit status: 0 cargo:rustc-link-lib=static=libminimap cargo:rustc-link-search=native=/storage/coda1/p-ktk3/0/jzhao399/rich_project_bio-konstantinidis/apps/minimap2-rs/target/release/build/minimap2-sys-a98d8c2a6b240956/out Compiled!

--- stderr thread 'main' panicked at 'Unable to find libclang: "the libclang shared library at /usr/lib64/clang-private/libclang.so.7 could not be opened: libclangAST.so.7: cannot open shared object file: No such file or directory"', /storage/home/hcoda1/4/jzhao399/.cargo/registry/src/github.com-1ecc6299db9ec823/bindgen-0.61.0/./lib.rs:2276:31 note: run with RUST_BACKTRACE=1 environment variable to display a backtrace

Thanks,

Jianshu

jguhlin / minimap2-rs

not compiling #8