search

jgurtowski / ectools

tools for error correction and working with long read data
BSD 3-Clause "New" or "Revised" License
44 stars 11 forks source link

Issue with launching Correction #8

Open sarasilvapereira opened 6 years ago

sarasilvapereira commented 6 years ago

Hi!

Is there an alternative for the for loop presented in step 8 of the READ.ME file that does not uses qsub?

$> for i in {0001..000N}; do cd $i; qsub -cwd -j y -t 1:${NUM_FILES_PER_PARTITION} ../correct.sh; cd ..; done

Where N is the number of partitions (directories) and NUM_FILES_PER_PARTITION is the number of files per partition specified in the partitions script (500 in this case)

Thanks

jgurtowski commented 6 years ago

Yes, look at #11 of the readme

On Tue, May 15, 2018 at 9:26 AM, ssilva1 notifications@github.com wrote:

Hi!

Is there an alternative for the for loop presented in step 8 of the READ.ME file that does not uses qsub?

$> for i in {0001..000N}; do cd $i; qsub -cwd -j y -t 1:${NUM_FILES_PER_PARTITION} ../correct.sh; cd ..; done

Where N is the number of partitions (directories) and NUM_FILES_PER_PARTITION is the number of files per partition specified in the partitions script (500 in this case)

Thanks

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/jgurtowski/ectools/issues/8, or mute the thread https://github.com/notifications/unsubscribe-auth/ABLfv02k_THEdHaS7PcSqyASSXaZqYtDks5tytecgaJpZM4T_i5y .