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jharri34
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krueger
Closed - Moved to new repo
https://www.biology.cis.uab.edu/krueger
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automate generting dict file
#32
jharri34
opened
7 years ago
0
automate generating fai file
#31
jharri34
opened
7 years ago
0
discuss whether we would want to merge gvcf's for expandability
#30
jharri34
opened
7 years ago
0
research MuTect
#29
jharri34
opened
7 years ago
0
Design Workflow Framework
#28
smchuks
closed
7 years ago
0
generate dict file
#27
jharri34
opened
7 years ago
2
automate generate .bai file
#26
jharri34
opened
7 years ago
2
research docker and its uses for the project
#25
jharri34
opened
7 years ago
0
convert fastq->ubam using wdl
#24
jharri34
opened
7 years ago
1
convert ubam -> bam
#23
jharri34
opened
7 years ago
2
Krueger fastqtoubam radamec
#22
radamec
closed
7 years ago
2
renaming aligned reads
#21
jharri34
closed
7 years ago
3
Test aligned reads
#20
jharri34
opened
7 years ago
2
research wdl
#19
jharri34
closed
7 years ago
3
rename aln*.bam files to just *.bam
#18
jharri34
closed
7 years ago
1
add columns representing files state
#17
jharri34
closed
7 years ago
0
convert gvcf to vcf
#16
jharri34
opened
7 years ago
3
added fields to database for preprocessing steps file
#15
jharri34
closed
7 years ago
0
create Data Pre-processing pipeline
#14
jharri34
opened
7 years ago
0
revert bam file fastq
#13
jharri34
closed
7 years ago
1
convert bam to gvcf
#12
jharri34
opened
7 years ago
6
convert ubam to bam
#11
jharri34
closed
7 years ago
1
bam to vcf conversion
#10
jharri34
closed
7 years ago
0
convert fastq to .ubam
#9
jharri34
opened
7 years ago
3
create database update script
#8
jharri34
opened
7 years ago
3
create sample upload page
#7
jharri34
closed
7 years ago
4
update .fastq file with .bam
#6
jharri34
closed
7 years ago
0
update file path with .bam file path ext
#5
jharri34
closed
7 years ago
0
figure out what .sai files are and what to do with them
#4
jharri34
closed
7 years ago
2
convert fastq files into .bam files
#3
jharri34
closed
7 years ago
0
create varient discovery pipeline
#2
jharri34
closed
7 years ago
1
add filepath to each sample into database
#1
jharri34
closed
7 years ago
0