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jheinen / GR.jl

Plotting for Julia based on GR, a framework for visualisation applications
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libGR issue preventing compilation #525

Closed eljfe closed 1 year ago

eljfe commented 1 year ago

Hi, Plot's won't compile, throwing a LoadError: could not load library "lib/libGR" dlopen(lib/libGR.dylib, 1): image not found issue.

This error is where I'm at after tinkering with various suggestions here and here in the GR repo. Not to mention here also in the GR repo.

Throwing darts. Not hitting the bullseye 🙂

FWIW my original error was 

LoadError: could not load library "/Users/eljfe/.julia/artifacts/3c56cc7ebceb38b1f48771bb4081dd9cf0f36853/lib/libGR.dylib"
dlopen(/Users/eljfe/.julia/artifacts/3c56cc7ebceb38b1f48771bb4081dd9cf0f36853/lib/libGR.dylib, 1): Library not loaded: @rpath/libfreetype.6.dylib
  Referenced from: /Users/eljfe/.julia/artifacts/3c56cc7ebceb38b1f48771bb4081dd9cf0f36853/lib/libGR.dylib
  Reason: Incompatible library version: libGR.dylib requires version 27.0.0 or later, but libfreetype.6.dylib provides version 24.0.0

Some of the commands I ran:

import Pkg
import Dates
Pkg.gc(;collect_delay=Dates.Day(0))
ENV["GRDIR"]=""
Pkg.build("GR")

Sorry it's a bit of a mess.

Thanks in advance,

jheinen commented 1 year ago

Are you using an up-to-date GR version (0.72.9)? Is there any other package installed that uses an old FT library?

Did you try it in a fresh environment?

eljfe commented 1 year ago

I have GR v0.72.9 installed.

Forgive me but I don't know what an FT library is.

Plots did install cleanly in a fresh environment! Progress!!

I should mention that I have 2 environments on this machine, a Xranklin.jl environment and the base environment. Neither are compiling Plots.

FYI working with Julia on this level is a first for me. What is the sanest way to fix this?

jheinen commented 1 year ago

FT == FreeType library

What do you mean with base environment? Which packages are installed?

eljfe commented 1 year ago

Base environment (for me) means what is referenced in, ~/.julia/environments/v1.9/Project.toml. This versus my Xranklin environment in ~/Documents/Xranklin/Project.toml.

Perhaps there is confusion because the Xranklin Project.toml merely points to packages in ~/.julia? I'd like to better understand how Julia manages this. It would help me to better communicate in the forums. 😄

Here is my package list:

Status `~/.julia/environments/v1.9/Project.toml`
  [336ed68f] CSV v0.10.11
  [13f3f980] CairoMakie v0.10.7
  [324d7699] CategoricalArrays v0.10.8
  [717857b8] DSP v0.7.8
  [a93c6f00] DataFrames v1.6.1
  [1313f7d8] DataFramesMeta v0.14.0
  [31c24e10] Distributions v0.25.98
  [713c75ef] Franklin v0.10.88
  [3a985190] FranklinTemplates v0.9.2
  [da1fdf0e] FreqTables v0.4.5
  [38e38edf] GLM v1.8.3
  [e9467ef8] GLMakie v0.8.7
  [7073ff75] IJulia v1.24.2
  [5ab0869b] KernelDensity v0.6.7
  [b964fa9f] LaTeXStrings v1.3.0
  [c7f686f2] MCMCChains v6.0.3
  [add582a8] MLJ v0.19.2
  [6ee0df7b] MLJLinearModels v0.9.2
  [86f7a689] NamedArrays v0.9.8
  [d9ec5142] NamedTupleTools v0.14.3
  [429524aa] Optim v1.7.6
  [91a5bcdd] Plots v1.38.16
  [c3e4b0f8] Pluto v0.19.27
  [ce6b1742] RDatasets v0.7.7
  [d0ee94f6] StanBase v4.8.1
  [e4723793] StanQuap v4.2.7
  [c1514b29] StanSample v7.4.2
  [2d09df54] StatisticalRethinking v4.7.2
⌃ [2913bbd2] StatsBase v0.33.21
  [f3b207a7] StatsPlots v0.15.6
  [fce5fe82] Turing v0.26.6
  [276b4fcb] WGLMakie v0.8.11
  [44d3d7a6] Weave v0.10.12
  [558449b0] Xranklin v0.1.0 `https://github.com/tlienart/Xranklin.jl#main`
  [8ba89e20] Distributed
  [37e2e46d] LinearAlgebra
Info Packages marked with ⌃ have new versions available and may be upgradable.
eljfe commented 1 year ago

Going to bump this issue.

Since my last post I ran rm -R ~/.julia/. Everything gone except for the ~/.julia/juliaup and ~/.julia/environments/v1.9/Project.toml / Manifest.toml items.

After a complete rebuild I stall have the same issue, same error message.

...

Further to the FreeType message I also tried: 

(@v1.9) pkg> up FreeType
    Updating registry at `~/.julia/registries/General.toml`
  No Changes to `~/.julia/environments/v1.9/Project.toml`
  No Changes to `~/.julia/environments/v1.9/Manifest.toml`
Precompiling project...
  ✗ Plots → IJuliaExt
  ✗ Plots → GeometryBasicsExt
  ✗ Plots → FileIOExt
  ✗ StatsPlots
  0 dependencies successfully precompiled in 75 seconds. 516 already precompiled. 2 skipped during auto due to previous errors.
  4 dependencies errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the packages

Any help moving this along is appreciated!

I have poked around google for details about the FT library. Am I right that it's an OS generic (non-julia) C/C++ library?

Anyway, yeah, in over my head.

tia,

eljfe commented 1 year ago

Further,

$ find /usr -name 'libfreetype.6.dylib' -print 2>/dev/null 
/usr/local/lib/libfreetype.6.dylib
/usr/local/lib/python3.10/site-packages/PIL/.dylibs/libfreetype.6.dylib
/usr/local/Cellar/freetype/2.13.1/lib/libfreetype.6.dylib
$ otool -L /usr/local/lib/libfreetype.6.dylib
otool -L /usr/local/lib/libfreetype.6.dylib
/usr/local/lib/libfreetype.6.dylib:
    /usr/local/opt/freetype/lib/libfreetype.6.dylib (compatibility version 27.0.0, current version 27.0.0)
    /usr/lib/libz.1.dylib (compatibility version 1.0.0, current version 1.2.11)
    /usr/lib/libbz2.1.0.dylib (compatibility version 1.0.0, current version 1.0.5)
    /usr/local/opt/libpng/lib/libpng16.16.dylib (compatibility version 57.0.0, current version 57.0.0)
    /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)

No idea if this is helpful. No idea how julia might be accessing this library. As indicated the libfreetype.6.dylib version is 27.0.0 which the compiler seems to want.

Useful? Possibly...

jheinen commented 1 year ago

I don't think that a system-wide Homebrew installation and Julia can co-exist. When using Julia, you probably have to remove /usr/local/lib from the DYLD_LIBRARY_PATH.

I didn't dare to say this: but enabling Homebrew in .profile (or wherever) in any login shell is not a good idea.

eljfe commented 1 year ago

My shell and homebrew are unaware of each other.

Running echo $DYLD_LIBRARY_PATH is empty.

I was able to cobble together the above mentioned otool -L command from this old PyPlot issue.

Also from the above mentioned PyPlot post.

julia> using Libdl

julia> filter!(lib -> occursin("freetype",lib), dllist())
String[]

I'm troubleshooting this issue at this stage, and I am the least qualified person to do so.

The question I have is which FT library does julia use and how can I fix this? Is there a fix?

As GRlib has thrown the compiler error I'm asking here. Maybe there is another corner of Julia I should be looking for answers? My julia workflow is severely hampered without the ability to use Plots.

jheinen commented 1 year ago

I have no idea, why in your environment GR requires FreeType version 27.0.0. On all the systems macOS systems I could test I found: @rpath/libfreetype.6.dylib (compatibility version 24.0.0, current version 24.4.0).

So the current state on your system is:

My problem is, that I can't reproduce the behaviour:

import Pkg
Pkg.add("CSV")
Pkg.add("CairoMakie")
Pkg.add("CategoricalArrays")
Pkg.add("DSP")
Pkg.add("DataFrames")
Pkg.add("DataFramesMeta")
Pkg.add("Distributions")
Pkg.add("Franklin")
Pkg.add("FranklinTemplates")
Pkg.add("FreqTables")
Pkg.add("GLM")
Pkg.add("GLMakie")
Pkg.add("IJulia")
Pkg.add("KernelDensity")
Pkg.add("LaTeXStrings")
Pkg.add("MCMCChains")
Pkg.add("MLJ")
Pkg.add("MLJLinearModels")
Pkg.add("NamedArrays")
Pkg.add("NamedTupleTools")
Pkg.add("Optim")
Pkg.add("Plots")
Pkg.add("Pluto")
Pkg.add("RDatasets")
Pkg.add("StanBase")
Pkg.add("StanQuap")
Pkg.add("StanSample")
Pkg.add("StatisticalRethinking")
Pkg.add("StatsBase")
Pkg.add("StatsPlots")
Pkg.add("Turing")
Pkg.add("WGLMakie")
Pkg.add("Weave")
Pkg.add(url="https://github.com/tlienart/Xranklin.jl", rev="main")
Pkg.add("Distributed")
Pkg.add("LinearAlgebra")

using Plots
plot(rand(10,5))

works just fine.

Those are the installed packages:

(@v1.11) pkg> st
Status `~/.julia/environments/v1.11/Project.toml`
  [336ed68f] CSV v0.10.11
  [13f3f980] CairoMakie v0.10.7
  [324d7699] CategoricalArrays v0.10.8
  [717857b8] DSP v0.7.8
  [a93c6f00] DataFrames v1.6.1
  [1313f7d8] DataFramesMeta v0.14.0
  [31c24e10] Distributions v0.25.98
  [713c75ef] Franklin v0.10.88
  [3a985190] FranklinTemplates v0.9.2
  [da1fdf0e] FreqTables v0.4.5
  [38e38edf] GLM v1.8.3
  [e9467ef8] GLMakie v0.8.7
  [7073ff75] IJulia v1.24.2
  [5ab0869b] KernelDensity v0.6.7
  [b964fa9f] LaTeXStrings v1.3.0
  [c7f686f2] MCMCChains v6.0.3
  [add582a8] MLJ v0.19.2
  [6ee0df7b] MLJLinearModels v0.9.2
  [86f7a689] NamedArrays v0.9.8
  [d9ec5142] NamedTupleTools v0.14.3
  [429524aa] Optim v1.7.6
  [91a5bcdd] Plots v1.38.17
  [c3e4b0f8] Pluto v0.19.27
  [ce6b1742] RDatasets v0.7.7
  [d0ee94f6] StanBase v4.8.1
  [e4723793] StanQuap v4.2.7
  [c1514b29] StanSample v7.4.2
  [2d09df54] StatisticalRethinking v4.7.2
  [2913bbd2] StatsBase v0.34.0
  [f3b207a7] StatsPlots v0.15.6
  [fce5fe82] Turing v0.27.0
  [276b4fcb] WGLMakie v0.8.11
  [44d3d7a6] Weave v0.10.12
  [558449b0] Xranklin v0.1.0 `https://github.com/tlienart/Xranklin.jl#main`
  [8ba89e20] Distributed
  [37e2e46d] LinearAlgebra
jheinen commented 1 year ago

I just talked to @giordano during the JuliaCon hackathon. He probably has an idea what causes the problem.

eljfe commented 1 year ago

Hey, thanks! All the best to the JuliaCon hackathon-ers!

jgilis commented 1 year ago

Same issue here! Also Julia 1.9, MacOS, same error meesage libGR.dylib requires version 27.0.0 or later, but libfreetype.6.dylib provides version 24.0.0

giordano commented 1 year ago

Ok, I tried to have a look today, but I can't reproduce the issue on M1 MacBook with this environment:

(tmp) pkg> st -m
Status `/private/tmp/Manifest.toml`
  [d1d4a3ce] BitFlags v0.1.7
  [944b1d66] CodecZlib v0.7.2
  [35d6a980] ColorSchemes v3.22.0
  [3da002f7] ColorTypes v0.11.4
  [c3611d14] ColorVectorSpace v0.10.0
  [5ae59095] Colors v0.12.10
  [34da2185] Compat v4.9.0
  [f0e56b4a] ConcurrentUtilities v2.2.1
  [d38c429a] Contour v0.6.2
  [9a962f9c] DataAPI v1.15.0
  [864edb3b] DataStructures v0.18.14
  [8bb1440f] DelimitedFiles v1.9.1
  [ffbed154] DocStringExtensions v0.9.3
  [460bff9d] ExceptionUnwrapping v0.1.9
  [c87230d0] FFMPEG v0.4.1
  [53c48c17] FixedPointNumbers v0.8.4
  [59287772] Formatting v0.4.2
  [28b8d3ca] GR v0.72.9
  [42e2da0e] Grisu v1.0.2
  [cd3eb016] HTTP v1.9.14
  [92d709cd] IrrationalConstants v0.2.2
  [1019f520] JLFzf v0.1.5
  [692b3bcd] JLLWrappers v1.4.1
  [682c06a0] JSON v0.21.4
  [b964fa9f] LaTeXStrings v1.3.0
  [23fbe1c1] Latexify v0.16.1
  [2ab3a3ac] LogExpFunctions v0.3.24
  [e6f89c97] LoggingExtras v1.0.0
  [1914dd2f] MacroTools v0.5.10
  [739be429] MbedTLS v1.1.7
  [442fdcdd] Measures v0.3.2
  [e1d29d7a] Missings v1.1.0
  [77ba4419] NaNMath v1.0.2
  [4d8831e6] OpenSSL v1.4.1
  [bac558e1] OrderedCollections v1.6.2
  [69de0a69] Parsers v2.7.2
  [b98c9c47] Pipe v1.3.0
  [ccf2f8ad] PlotThemes v3.1.0
  [995b91a9] PlotUtils v1.3.5
  [91a5bcdd] Plots v1.38.17
  [aea7be01] PrecompileTools v1.1.2
  [21216c6a] Preferences v1.4.0
  [3cdcf5f2] RecipesBase v1.3.4
  [01d81517] RecipesPipeline v0.6.12
  [189a3867] Reexport v1.2.2
  [05181044] RelocatableFolders v1.0.0
  [ae029012] Requires v1.3.0
  [6c6a2e73] Scratch v1.2.0
  [992d4aef] Showoff v1.0.3
  [777ac1f9] SimpleBufferStream v1.1.0
  [a2af1166] SortingAlgorithms v1.1.1
  [82ae8749] StatsAPI v1.6.0
  [2913bbd2] StatsBase v0.34.0
  [62fd8b95] TensorCore v0.1.1
  [3bb67fe8] TranscodingStreams v0.9.13
  [5c2747f8] URIs v1.4.2
  [1cfade01] UnicodeFun v0.4.1
  [1986cc42] Unitful v1.16.1
  [45397f5d] UnitfulLatexify v1.6.3
  [41fe7b60] Unzip v0.2.0
  [6e34b625] Bzip2_jll v1.0.8+0
  [83423d85] Cairo_jll v1.16.1+1
  [2e619515] Expat_jll v2.5.0+0
⌃ [b22a6f82] FFMPEG_jll v4.4.2+2
  [a3f928ae] Fontconfig_jll v2.13.93+0
  [d7e528f0] FreeType2_jll v2.13.1+0
  [559328eb] FriBidi_jll v1.0.10+0
  [0656b61e] GLFW_jll v3.3.8+0
  [d2c73de3] GR_jll v0.72.9+0
  [78b55507] Gettext_jll v0.21.0+0
  [7746bdde] Glib_jll v2.74.0+2
  [3b182d85] Graphite2_jll v1.3.14+0
  [2e76f6c2] HarfBuzz_jll v2.8.1+1
  [aacddb02] JpegTurbo_jll v2.1.91+0
  [c1c5ebd0] LAME_jll v3.100.1+0
  [88015f11] LERC_jll v3.0.0+1
  [1d63c593] LLVMOpenMP_jll v15.0.4+0
  [dd4b983a] LZO_jll v2.10.1+0
⌅ [e9f186c6] Libffi_jll v3.2.2+1
  [d4300ac3] Libgcrypt_jll v1.8.7+0
  [7e76a0d4] Libglvnd_jll v1.6.0+0
  [7add5ba3] Libgpg_error_jll v1.42.0+0
  [94ce4f54] Libiconv_jll v1.16.1+2
  [4b2f31a3] Libmount_jll v2.35.0+0
  [89763e89] Libtiff_jll v4.5.1+1
  [38a345b3] Libuuid_jll v2.36.0+0
  [e7412a2a] Ogg_jll v1.3.5+1
⌅ [458c3c95] OpenSSL_jll v1.1.21+0
  [91d4177d] Opus_jll v1.3.2+0
  [30392449] Pixman_jll v0.42.2+0
  [c0090381] Qt6Base_jll v6.4.2+3
  [a2964d1f] Wayland_jll v1.21.0+0
  [2381bf8a] Wayland_protocols_jll v1.25.0+0
  [02c8fc9c] XML2_jll v2.10.3+0
  [aed1982a] XSLT_jll v1.1.34+0
  [ffd25f8a] XZ_jll v5.4.3+1
  [4f6342f7] Xorg_libX11_jll v1.8.6+0
  [0c0b7dd1] Xorg_libXau_jll v1.0.11+0
  [935fb764] Xorg_libXcursor_jll v1.2.0+4
  [a3789734] Xorg_libXdmcp_jll v1.1.4+0
  [1082639a] Xorg_libXext_jll v1.3.4+4
  [d091e8ba] Xorg_libXfixes_jll v5.0.3+4
  [a51aa0fd] Xorg_libXi_jll v1.7.10+4
  [d1454406] Xorg_libXinerama_jll v1.1.4+4
  [ec84b674] Xorg_libXrandr_jll v1.5.2+4
  [ea2f1a96] Xorg_libXrender_jll v0.9.10+4
  [14d82f49] Xorg_libpthread_stubs_jll v0.1.1+0
  [c7cfdc94] Xorg_libxcb_jll v1.15.0+0
  [cc61e674] Xorg_libxkbfile_jll v1.1.2+0
  [12413925] Xorg_xcb_util_image_jll v0.4.0+1
  [2def613f] Xorg_xcb_util_jll v0.4.0+1
  [975044d2] Xorg_xcb_util_keysyms_jll v0.4.0+1
  [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.9+1
  [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.1+1
  [35661453] Xorg_xkbcomp_jll v1.4.6+0
  [33bec58e] Xorg_xkeyboard_config_jll v2.39.0+0
  [c5fb5394] Xorg_xtrans_jll v1.5.0+0
  [3161d3a3] Zstd_jll v1.5.5+0
⌅ [214eeab7] fzf_jll v0.29.0+0
  [a4ae2306] libaom_jll v3.4.0+0
  [0ac62f75] libass_jll v0.15.1+0
  [f638f0a6] libfdk_aac_jll v2.0.2+0
  [b53b4c65] libpng_jll v1.6.38+0
  [f27f6e37] libvorbis_jll v1.3.7+1
  [1270edf5] x264_jll v2021.5.5+0
  [dfaa095f] x265_jll v3.5.0+0
  [d8fb68d0] xkbcommon_jll v1.4.1+0
  [0dad84c5] ArgTools v1.1.1
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching
  [b77e0a4c] InteractiveUtils
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [a63ad114] Mmap
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization
  [6462fe0b] Sockets
  [2f01184e] SparseArrays v1.10.0
  [10745b16] Statistics v1.9.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [e66e0078] CompilerSupportLibraries_jll v1.0.5+0
  [deac9b47] LibCURL_jll v8.0.1+0
  [29816b5a] LibSSH2_jll v1.10.2+0
  [c8ffd9c3] MbedTLS_jll v2.28.2+0
  [14a3606d] MozillaCACerts_jll v2023.1.10
  [4536629a] OpenBLAS_jll v0.3.23+0
  [05823500] OpenLibm_jll v0.8.1+0
  [efcefdf7] PCRE2_jll v10.42.0+0
  [bea87d4a] SuiteSparse_jll v7.2.0+0
  [83775a58] Zlib_jll v1.2.13+0
  [8e850b90] libblastrampoline_jll v5.8.0+0
  [8e850ede] nghttp2_jll v1.52.0+0
  [3f19e933] p7zip_jll v17.4.0+0
Info Packages marked with ⌃ and ⌅ have new versions available, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

If anyone wants to get help they're going to have to provide the status of the full manifest with ]st -m. NOTE: please use an as minimal environment as possible, using overly crowded environments like the ones showed above (a) is not useful for yourself (b) makes tracking down problems harder.

jheinen commented 1 year ago

I tried several MacBooks and CentOS Unix machines both with Julia 1.9.2 and 1.11-DEV - I couldn't reproduce the issue on any of our machines.

giordano commented 1 year ago

It's probably a combination of some incompatible packages which only happens in crowded environments. I'm confident this can be fixed with appropriate compat bounds in the registry, but I need to know what are the incompatible versions people are getting to start with.

jgilis commented 1 year ago

(@v1.9) pkg> st -m Status ~/.julia/environments/v1.9/Manifest.toml [621f4979] AbstractFFTs v1.5.0 [398f06c4] AbstractLattices v0.2.1 [1520ce14] AbstractTrees v0.4.4 [79e6a3ab] Adapt v3.6.2 [27a7e980] Animations v0.4.1 [ec485272] ArnoldiMethod v0.2.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.4.11 [30b0a656] ArrayInterfaceCore v0.1.29 ⌅ [67c07d97] Automa v0.8.3 [13072b0f] AxisAlgorithms v1.0.1 [39de3d68] AxisArrays v0.4.7 [6e4b80f9] BenchmarkTools v1.3.2 [d1d4a3ce] BitFlags v0.1.7 [62783981] BitTwiddlingConvenienceFunctions v0.1.5 [a74b3585] Blosc v0.7.3 [e1450e63] BufferedStreams v1.2.0 [fa961155] CEnum v0.4.2 [2a0fbf3d] CPUSummary v0.2.3 [96374032] CRlibm v1.0.1 [336ed68f] CSV v0.10.11 [49dc2e85] Calculus v0.5.1 [aafaddc9] CatIndices v0.2.2 [324d7699] CategoricalArrays v0.10.8 [d360d2e6] ChainRulesCore v1.16.0 [fb6a15b2] CloseOpenIntervals v0.1.12 [aaaa29a8] Clustering v0.15.4 [944b1d66] CodecZlib v0.7.2 [a2cac450] ColorBrewer v0.4.0 [35d6a980] ColorSchemes v3.22.0 [3da002f7] ColorTypes v0.11.4 ⌅ [c3611d14] ColorVectorSpace v0.9.10 [5ae59095] Colors v0.12.10 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.0 [34da2185] Compat v4.8.0 [ed09eef8] ComputationalResources v0.3.2 [f0e56b4a] ConcurrentUtilities v2.2.1 [8f4d0f93] Conda v1.9.1 [187b0558] ConstructionBase v1.5.3 [d38c429a] Contour v0.6.2 [150eb455] CoordinateTransformations v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [dc8bdbbb] CustomUnitRanges v1.0.2 [9a962f9c] DataAPI v1.15.0 [a93c6f00] DataFrames v1.6.1 [864edb3b] DataStructures v0.18.14 [e2d170a0] DataValueInterfaces v1.0.0 [e7dc6d0d] DataValues v0.4.13 [7806a523] DecisionTree v0.12.3 ⌅ [927a84f5] DelaunayTriangulation v0.7.2 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.9 [31c24e10] Distributions v0.25.98 ⌅ [ffbed154] DocStringExtensions v0.8.6 [497a8b3b] DoubleFloats v1.2.4 [fa6b7ba4] DualNumbers v0.6.8 [4e289a0a] EnumX v1.0.4 [90fa49ef] ErrorfreeArithmetic v0.5.2 [251d5f9e] EvalMetrics v0.2.1 [429591f6] ExactPredicates v2.2.5 [7876af07] Example v0.5.3 [460bff9d] ExceptionUnwrapping v0.1.9 [e2ba6199] ExprTools v0.1.10 [411431e0] Extents v0.1.1 [8f5d6c58] EzXML v1.1.0 [c87230d0] FFMPEG v0.4.1 [4f61f5a4] FFTViews v0.3.2 [7a1cc6ca] FFTW v1.7.1 [fa42c844] FastRounding v0.3.1 [5789e2e9] FileIO v1.16.1 [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.20 [1a297f60] FillArrays v1.5.0 [6a86dc24] FiniteDiff v2.21.1 [53c48c17] FixedPointNumbers v0.8.4 [59287772] Formatting v0.4.2 [f6369f11] ForwardDiff v0.10.35 [b38be410] FreeType v4.0.0 [663a7486] FreeTypeAbstraction v0.10.0 [f7f18e0c] GLFW v3.4.1 [8d5ece8b] GLMNet v0.7.2 [e9467ef8] GLMakie v0.8.7 [46192b85] GPUArraysCore v0.1.5 ⌃ [28b8d3ca] GR v0.72.8 [14197337] GenericLinearAlgebra v0.3.11 [cf35fbd7] GeoInterface v1.3.1 [5c1252a2] GeometryBasics v0.4.9 [a2bd30eb] Graphics v1.1.2 [86223c79] Graphs v1.8.0 [3955a311] GridLayoutBase v0.9.1 [42e2da0e] Grisu v1.0.2 [c8ec2601] H5Zblosc v0.1.1 [f67ccb44] HDF5 v0.16.15 [cd3eb016] HTTP v1.9.14 [2c695a8d] HistogramThresholding v0.3.1 [3e5b6fbb] HostCPUFeatures v0.1.15 [34004b35] HypergeometricFunctions v0.3.23 [09f84164] HypothesisTests v0.11.0 [7073ff75] IJulia v1.24.2 [615f187c] IfElse v0.1.1 [2803e5a7] ImageAxes v0.6.11 ⌃ [c817782e] ImageBase v0.1.5 [cbc4b850] ImageBinarization v0.3.0 [f332f351] ImageContrastAdjustment v0.3.12 ⌅ [a09fc81d] ImageCore v0.9.4 [89d5987c] ImageCorners v0.1.3 [51556ac3] ImageDistances v0.2.17 ⌃ [6a3955dd] ImageFiltering v0.7.6 [82e4d734] ImageIO v0.6.7 [6218d12a] ImageMagick v1.3.0 [bc367c6b] ImageMetadata v0.9.9 [787d08f9] ImageMorphology v0.4.5 [2996bd0c] ImageQualityIndexes v0.3.7 ⌃ [80713f31] ImageSegmentation v1.8.1 [4e3cecfd] ImageShow v0.3.8 [02fcd773] ImageTransformations v0.10.0 [916415d5] Images v0.26.0 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.3 [842dd82b] InlineStrings v1.4.0 [18e54dd8] IntegerMathUtils v0.1.2 [1d092043] IntegralArrays v0.1.5 [a98d9a8b] Interpolations v0.14.7 [d1acc4aa] IntervalArithmetic v0.20.9 [8197267c] IntervalSets v0.7.7 [41ab1584] InvertedIndices v1.3.0 [92d709cd] IrrationalConstants v0.2.2 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.8.0 [1c8ee90f] IterableTables v1.0.0 [82899510] IteratorInterfaceExtensions v1.0.0 [4138dd39] JLD v0.13.3 [033835bb] JLD2 v0.4.33 [1019f520] JLFzf v0.1.5 [692b3bcd] JLLWrappers v1.4.1 [682c06a0] JSON v0.21.4 [7d188eb4] JSONSchema v1.2.0 [b835a17e] JpegTurbo v0.1.3 [5ab0869b] KernelDensity v0.6.7 [2d691ee1] LIBLINEAR v0.6.0 [b1bec4e5] LIBSVM v0.8.0 [b964fa9f] LaTeXStrings v1.3.0 [23fbe1c1] Latexify v0.16.1 [10f19ff3] LayoutPointers v0.1.14 [8cdb02fc] LazyModules v0.3.1 [9c8b4983] LightXML v0.9.0 [d3d80556] LineSearches v7.2.0 [9b3f67b0] LinearAlgebraX v0.1.12 [2ab3a3ac] LogExpFunctions v0.3.24 [e6f89c97] LoggingExtras v1.0.0 [bdcacae8] LoopVectorization v0.12.165 [2fda8390] LsqFit v0.13.0 [23992714] MAT v0.10.5 [f0e99cf1] MLBase v0.9.1 [1914dd2f] MacroTools v0.5.10 [ee78f7c6] Makie v0.19.7 [20f20a25] MakieCore v0.6.4 [d125e4d3] ManualMemory v0.1.8 [dbb5928d] MappedArrays v0.4.2 [7eb4fadd] Match v1.2.0 [0a4f8689] MathTeXEngine v0.5.6 [739be429] MbedTLS v1.1.7 [442fdcdd] Measures v0.3.2 [7269a6da] MeshIO v0.4.10 [626554b9] MetaGraphs v0.7.2 [e1d29d7a] Missings v1.1.0 [78c3b35d] Mocking v0.7.7 [66fc600b] ModernGL v1.1.7 [7475f97c] Mods v1.3.3 [e94cdb99] MosaicViews v0.3.4 [3b2b4ff1] Multisets v0.4.4 [6f286f6a] MultivariateStats v0.10.2 [d41bc354] NLSolversBase v7.8.3 [15e1cf62] NPZ v0.4.3 [77ba4419] NaNMath v1.0.2 [dd2c4c9e] NearestNeighborDescent v0.3.6 [b8a86587] NearestNeighbors v0.4.13 [f09324ee] Netpbm v1.1.1 [2bd173c7] NodeJS v2.0.0 [4d1e1d77] Nullables v1.0.0 [510215fc] Observables v0.5.4 [6fe1bfb0] OffsetArrays v1.12.10 [52e1d378] OpenEXR v0.3.2 [4d8831e6] OpenSSL v1.4.1 [429524aa] Optim v1.7.6 [87e2bd06] OptimBase v2.0.2 [bac558e1] OrderedCollections v1.6.2 [90014a1f] PDMats v0.11.17 [f57f5aa1] PNGFiles v0.4.0 [19eb6ba3] Packing v0.5.0 [5432bcbf] PaddedViews v0.5.12 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.7.2 [2ae35dd2] Permutations v0.4.16 [b98c9c47] Pipe v1.3.0 [eebad327] PkgVersion v0.3.2 [ccf2f8ad] PlotThemes v3.1.0 [995b91a9] PlotUtils v1.3.5 [91a5bcdd] Plots v1.38.17 [1d0040c9] PolyesterWeave v0.2.1 [647866c9] PolygonOps v0.1.2 [f27b6e38] Polynomials v3.2.13 [2dfb63ee] PooledArrays v1.4.2 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.1.2 [21216c6a] Preferences v1.4.0 [08abe8d2] PrettyTables v2.2.7 [27ebfcd6] Primes v0.5.4 [92933f4c] ProgressMeter v1.7.2 [438e738f] PyCall v1.96.1 [4b34888f] QOI v1.0.0 [1fd47b50] QuadGK v2.8.2 [be4d8f0f] Quadmath v0.5.9 [94ee1d12] Quaternions v0.7.4 [6f49c342] RCall v0.13.15 ⌅ [df47a6cb] RData v0.8.3 [ce6b1742] RDatasets v0.7.7 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [01d81517] RecipesPipeline v0.6.12 [189a3867] Reexport v1.2.2 [dee08c22] RegionTrees v0.3.2 [05181044] RelocatableFolders v1.0.0 [ae029012] Requires v1.3.0 [286e9d63] RingLists v0.2.7 [79098fc4] Rmath v0.7.1 [f2b01f46] Roots v2.0.17 [6038ab10] Rotations v1.5.1 [5eaf0fd0] RoundingEmulator v0.2.1 [fdea26ae] SIMD v3.4.5 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.39 [7b38b023] ScanByte v0.4.0 [3646fa90] ScikitLearn v0.7.0 [6e75b9c4] ScikitLearnBase v0.5.0 [6c6a2e73] Scratch v1.2.0 [91c51154] SentinelArrays v1.4.0 [3cc68bcd] SetRounding v0.2.1 [efcf1570] Setfield v1.1.1 [65257c39] ShaderAbstractions v0.3.0 [1277b4bf] ShiftedArrays v2.0.0 [992d4aef] Showoff v1.0.3 [73760f76] SignedDistanceFields v0.4.0 [777ac1f9] SimpleBufferStream v1.1.0 [55797a34] SimpleGraphs v0.8.4 [ec83eff0] SimplePartitions v0.3.0 [cc47b68c] SimplePolynomials v0.2.12 [a6525b86] SimpleRandom v0.3.1 [699a6c99] SimpleTraits v0.9.4 [47aef6b3] SimpleWeightedGraphs v1.4.0 [45858cf5] Sixel v0.1.3 [66db9d55] SnoopPrecompile v1.0.3 [b85f4697] SoftGlobalScope v1.1.0 [a2af1166] SortingAlgorithms v1.1.1 [276daf66] SpecialFunctions v2.3.0 ⌅ [c5dd0088] StableHashTraits v0.3.1 [cae243ae] StackViews v0.1.1 [aedffcd0] Static v0.8.8 [0d7ed370] StaticArrayInterface v1.4.0 [90137ffa] StaticArrays v1.6.2 [1e83bf80] StaticArraysCore v1.4.2 [82ae8749] StatsAPI v1.6.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.3.0 [3eaba693] StatsModels v0.7.2 [f3b207a7] StatsPlots v0.15.6 [892a3eda] StringManipulation v0.3.0 [09ab397b] StructArrays v0.6.15 [fd094767] Suppressor v0.2.4 [ab02a1b2] TableOperations v1.2.0 [5e66a065] TableShowUtils v0.2.6 [3783bdb8] TableTraits v1.0.1 [382cd787] TableTraitsUtils v1.0.2 [bd369af6] Tables v1.10.1 [62fd8b95] TensorCore v0.1.1 [e0df1984] TextParse v1.0.2 [8290d209] ThreadingUtilities v0.5.2 [731e570b] TiffImages v0.6.4 [06e1c1a7] TiledIteration v0.5.0 [f269a46b] TimeZones v1.11.0 [3bb67fe8] TranscodingStreams v0.9.13 [981d1d27] TriplotBase v0.1.0 [9d95972d] TupleTools v1.3.0 [c4f8c510] UMAP v0.1.10 [30578b45] URIParser v0.4.1 [5c2747f8] URIs v1.4.2 [3a884ed6] UnPack v1.0.2 [1cfade01] UnicodeFun v0.4.1 [1986cc42] Unitful v1.16.0 [45397f5d] UnitfulLatexify v1.6.3 [41fe7b60] Unzip v0.2.0 [770da0de] UpdateJulia v0.4.2 [3d5dd08c] VectorizationBase v0.21.64 [239c3e63] Vega v2.6.2 [0ae4a718] VegaDatasets v2.1.1 [112f6efa] VegaLite v3.2.3 [81def892] VersionParsing v1.3.0 [ea10d353] WeakRefStrings v1.4.2 [cc8bc4a8] Widgets v0.6.6 [1b915085] WinReg v1.0.0 [efce3f68] WoodburyMatrices v0.5.5 [76eceee3] WorkerUtilities v1.6.1 [fdbf4ff8] XLSX v0.9.0 [c2297ded] ZMQ v1.2.2 [a5390f91] ZipFile v0.10.1 ⌅ [68821587] Arpack_jll v3.5.1+1 [0b7ba130] Blosc_jll v1.21.4+0 [6e34b625] Bzip2_jll v1.0.8+0 [4e9b3aee] CRlibm_jll v1.0.1+0 [83423d85] Cairo_jll v1.16.1+1 [5ae413db] EarCut_jll v2.2.4+0 [2e619515] Expat_jll v2.5.0+0 ⌃ [b22a6f82] FFMPEG_jll v4.4.2+2 [f5851436] FFTW_jll v3.3.10+0 [a3f928ae] Fontconfig_jll v2.13.93+0 ⌅ [d7e528f0] FreeType2_jll v2.10.4+0 [559328eb] FriBidi_jll v1.0.10+0 [0656b61e] GLFW_jll v3.3.8+0 ⌅ [d2c73de3] GR_jll v0.72.8+0 [78b55507] Gettext_jll v0.21.0+0 [7746bdde] Glib_jll v2.74.0+2 [3b182d85] Graphite2_jll v1.3.14+0 ⌃ [0234f1f7] HDF5_jll v1.12.2+2 [2e76f6c2] HarfBuzz_jll v2.8.1+1 ⌅ [c73af94c] ImageMagick_jll v6.9.10-12+3 [905a6f67] Imath_jll v3.1.7+0 [1d5cc7b8] IntelOpenMP_jll v2023.1.0+0 [aacddb02] JpegTurbo_jll v2.1.91+0 [c1c5ebd0] LAME_jll v3.100.1+0 [88015f11] LERC_jll v3.0.0+1 [1d63c593] LLVMOpenMP_jll v15.0.4+0 [dd4b983a] LZO_jll v2.10.1+0 ⌅ [e9f186c6] Libffi_jll v3.2.2+1 [d4300ac3] Libgcrypt_jll v1.8.7+0 [7e76a0d4] Libglvnd_jll v1.6.0+0 [7add5ba3] Libgpg_error_jll v1.42.0+0 [94ce4f54] Libiconv_jll v1.16.1+2 [4b2f31a3] Libmount_jll v2.35.0+0 ⌅ [89763e89] Libtiff_jll v4.4.0+0 [38a345b3] Libuuid_jll v2.36.0+0 [5ced341a] Lz4_jll v1.9.3+0 [856f044c] MKL_jll v2023.1.0+0 [e7412a2a] Ogg_jll v1.3.5+1 [18a262bb] OpenEXR_jll v3.1.4+0 ⌅ [458c3c95] OpenSSL_jll v1.1.21+0 [efe28fd5] OpenSpecFun_jll v0.5.5+0 [91d4177d] Opus_jll v1.3.2+0 [30392449] Pixman_jll v0.42.2+0 [ea2cea3b] Qt5Base_jll v5.15.3+2 [f50d1b31] Rmath_jll v0.4.0+0 [a2964d1f] Wayland_jll v1.21.0+0 [2381bf8a] Wayland_protocols_jll v1.25.0+0 [02c8fc9c] XML2_jll v2.10.3+0 [aed1982a] XSLT_jll v1.1.34+0 [4f6342f7] Xorg_libX11_jll v1.8.6+0 [0c0b7dd1] Xorg_libXau_jll v1.0.11+0 [935fb764] Xorg_libXcursor_jll v1.2.0+4 [a3789734] Xorg_libXdmcp_jll v1.1.4+0 [1082639a] Xorg_libXext_jll v1.3.4+4 [d091e8ba] Xorg_libXfixes_jll v5.0.3+4 [a51aa0fd] Xorg_libXi_jll v1.7.10+4 [d1454406] Xorg_libXinerama_jll v1.1.4+4 [ec84b674] Xorg_libXrandr_jll v1.5.2+4 [ea2f1a96] Xorg_libXrender_jll v0.9.10+4 [14d82f49] Xorg_libpthread_stubs_jll v0.1.1+0 [c7cfdc94] Xorg_libxcb_jll v1.15.0+0 [cc61e674] Xorg_libxkbfile_jll v1.1.2+0 [12413925] Xorg_xcb_util_image_jll v0.4.0+1 [2def613f] Xorg_xcb_util_jll v0.4.0+1 [975044d2] Xorg_xcb_util_keysyms_jll v0.4.0+1 [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.9+1 [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.1+1 [35661453] Xorg_xkbcomp_jll v1.4.6+0 [33bec58e] Xorg_xkeyboard_config_jll v2.39.0+0 [c5fb5394] Xorg_xtrans_jll v1.5.0+0 [8f1865be] ZeroMQ_jll v4.3.4+0 [3161d3a3] Zstd_jll v1.5.5+0 ⌅ [214eeab7] fzf_jll v0.29.0+0 ⌅ [78c6b45d] glmnet_jll v2.0.13+0 [9a68df92] isoband_jll v0.2.3+0 [a4ae2306] libaom_jll v3.4.0+0 [0ac62f75] libass_jll v0.15.1+0 [f638f0a6] libfdk_aac_jll v2.0.2+0 [275f1f90] liblinear_jll v2.30.0+0 [b53b4c65] libpng_jll v1.6.38+0 [075b6546] libsixel_jll v1.10.3+0 [a9144af2] libsodium_jll v1.0.20+0 [08558c22] libsvm_jll v3.25.0+0 [f27f6e37] libvorbis_jll v1.3.7+1 [1270edf5] x264_jll v2021.5.5+0 [dfaa095f] x265_jll v3.5.0+0 [d8fb68d0] xkbcommon_jll v1.4.1+0 [0dad84c5] ArgTools v1.1.1 [56f22d72] Artifacts [2a0f44e3] Base64 [8bf52ea8] CRC32c [ade2ca70] Dates [8ba89e20] Distributed [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching [9fa8497b] Future [b77e0a4c] InteractiveUtils [4af54fe1] LazyArtifacts [b27032c2] LibCURL v0.6.3 [76f85450] LibGit2 [8f399da3] Libdl [37e2e46d] LinearAlgebra [56ddb016] Logging [d6f4376e] Markdown [a63ad114] Mmap [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.9.0 [de0858da] Printf [9abbd945] Profile [3fa0cd96] REPL [9a3f8284] Random [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization [1a1011a3] SharedArrays [6462fe0b] Sockets [2f01184e] SparseArrays [10745b16] Statistics v1.9.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test [cf7118a7] UUIDs [4ec0a83e] Unicode [e66e0078] CompilerSupportLibraries_jll v1.0.2+0 [deac9b47] LibCURL_jll v7.84.0+0 [29816b5a] LibSSH2_jll v1.10.2+0 [c8ffd9c3] MbedTLS_jll v2.28.2+0 [14a3606d] MozillaCACerts_jll v2022.10.11 [4536629a] OpenBLAS_jll v0.3.21+4 [05823500] OpenLibm_jll v0.8.1+0 [efcefdf7] PCRE2_jll v10.42.0+0 [bea87d4a] SuiteSparse_jll v5.10.1+6 [83775a58] Zlib_jll v1.2.13+0 [8e850b90] libblastrampoline_jll v5.7.0+0 [8e850ede] nghttp2_jll v1.48.0+0 [3f19e933] p7zip_jll v17.4.0+0 Info Packages marked with ⌃ and ⌅ have new versions available, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use status --outdated -m

jgilis commented 1 year ago

I am new to Julia (as you might have expected) and was just following some online tutorials. I am an R programmer, with some experience in Python and its conda environments.

You a probably correct that this is an issue that solely occurs in crowded environments. I was just unaware of how Julia environments work. After properly setting up a project-specific environment, the issue was resolved.

For the sake of completeness, I above added my (@v1.9) pkg> st -m output as requested (Im on MacOS intel btw). However, it seems that in my case the issues has arisen due to poor package management on my side, so I doubt if this is an issue that anyone should act upon.

Thanks for your help, Jeroen

giordano commented 1 year ago

I still think we shouldn't let users find themselves into broken states however crowded their environment is, compat bounds in the registry can help with that. I'm now away from computer, will try to have a look again when I'll be back now that I have the full list of packages that caused you troubles.

giordano commented 1 year ago

Uhm, I still can't reproduce the issue with the following environment:

(tmp) pkg> st
Status `/private/tmp/Project.toml`
⌃ [d7e528f0] FreeType2_jll v2.10.4+0
⌃ [d2c73de3] GR_jll v0.72.8+0
Info Packages marked with ⌃ have new versions available and may be upgradable.

(tmp) pkg> st -m
Status `/private/tmp/Manifest.toml`
  [692b3bcd] JLLWrappers v1.4.1
  [21216c6a] Preferences v1.4.0
  [6e34b625] Bzip2_jll v1.0.8+0
  [83423d85] Cairo_jll v1.16.1+1
  [2e619515] Expat_jll v2.5.0+0
⌃ [b22a6f82] FFMPEG_jll v4.4.2+2
  [a3f928ae] Fontconfig_jll v2.13.93+0
⌃ [d7e528f0] FreeType2_jll v2.10.4+0
  [559328eb] FriBidi_jll v1.0.10+0
  [0656b61e] GLFW_jll v3.3.8+0
⌃ [d2c73de3] GR_jll v0.72.8+0
  [78b55507] Gettext_jll v0.21.0+0
  [7746bdde] Glib_jll v2.74.0+2
  [3b182d85] Graphite2_jll v1.3.14+0
  [2e76f6c2] HarfBuzz_jll v2.8.1+1
  [aacddb02] JpegTurbo_jll v2.1.91+0
  [c1c5ebd0] LAME_jll v3.100.1+0
  [88015f11] LERC_jll v3.0.0+1
  [1d63c593] LLVMOpenMP_jll v15.0.4+0
  [dd4b983a] LZO_jll v2.10.1+0
⌅ [e9f186c6] Libffi_jll v3.2.2+1
  [d4300ac3] Libgcrypt_jll v1.8.7+0
  [7e76a0d4] Libglvnd_jll v1.6.0+0
  [7add5ba3] Libgpg_error_jll v1.42.0+0
  [94ce4f54] Libiconv_jll v1.16.1+2
  [4b2f31a3] Libmount_jll v2.35.0+0
⌅ [89763e89] Libtiff_jll v4.4.0+0
  [38a345b3] Libuuid_jll v2.36.0+0
  [e7412a2a] Ogg_jll v1.3.5+1
⌅ [458c3c95] OpenSSL_jll v1.1.21+0
  [91d4177d] Opus_jll v1.3.2+0
  [30392449] Pixman_jll v0.42.2+0
  [ea2cea3b] Qt5Base_jll v5.15.3+2
  [a2964d1f] Wayland_jll v1.21.0+0
  [2381bf8a] Wayland_protocols_jll v1.25.0+0
  [02c8fc9c] XML2_jll v2.10.3+0
  [aed1982a] XSLT_jll v1.1.34+0
  [4f6342f7] Xorg_libX11_jll v1.8.6+0
  [0c0b7dd1] Xorg_libXau_jll v1.0.11+0
  [935fb764] Xorg_libXcursor_jll v1.2.0+4
  [a3789734] Xorg_libXdmcp_jll v1.1.4+0
  [1082639a] Xorg_libXext_jll v1.3.4+4
  [d091e8ba] Xorg_libXfixes_jll v5.0.3+4
  [a51aa0fd] Xorg_libXi_jll v1.7.10+4
  [d1454406] Xorg_libXinerama_jll v1.1.4+4
  [ec84b674] Xorg_libXrandr_jll v1.5.2+4
  [ea2f1a96] Xorg_libXrender_jll v0.9.10+4
  [14d82f49] Xorg_libpthread_stubs_jll v0.1.1+0
  [c7cfdc94] Xorg_libxcb_jll v1.15.0+0
  [cc61e674] Xorg_libxkbfile_jll v1.1.2+0
  [12413925] Xorg_xcb_util_image_jll v0.4.0+1
  [2def613f] Xorg_xcb_util_jll v0.4.0+1
  [975044d2] Xorg_xcb_util_keysyms_jll v0.4.0+1
  [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.9+1
  [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.1+1
  [35661453] Xorg_xkbcomp_jll v1.4.6+0
  [33bec58e] Xorg_xkeyboard_config_jll v2.39.0+0
  [c5fb5394] Xorg_xtrans_jll v1.5.0+0
  [3161d3a3] Zstd_jll v1.5.5+0
  [a4ae2306] libaom_jll v3.4.0+0
  [0ac62f75] libass_jll v0.15.1+0
  [f638f0a6] libfdk_aac_jll v2.0.2+0
  [b53b4c65] libpng_jll v1.6.38+0
  [f27f6e37] libvorbis_jll v1.3.7+1
  [1270edf5] x264_jll v2021.5.5+0
  [dfaa095f] x265_jll v3.5.0+0
  [d8fb68d0] xkbcommon_jll v1.4.1+0
  [0dad84c5] ArgTools v1.1.1
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching
  [b77e0a4c] InteractiveUtils
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2
  [8f399da3] Libdl
  [56ddb016] Logging
  [d6f4376e] Markdown
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization
  [6462fe0b] Sockets
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [e66e0078] CompilerSupportLibraries_jll v1.0.5+0
  [deac9b47] LibCURL_jll v8.0.1+0
  [29816b5a] LibSSH2_jll v1.10.2+0
  [c8ffd9c3] MbedTLS_jll v2.28.2+0
  [14a3606d] MozillaCACerts_jll v2023.1.10
  [efcefdf7] PCRE2_jll v10.42.0+0
  [83775a58] Zlib_jll v1.2.13+0
  [8e850ede] nghttp2_jll v1.52.0+0
  [3f19e933] p7zip_jll v17.4.0+0
Info Packages marked with ⌃ and ⌅ have new versions available, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

😕

eljfe commented 1 year ago

Hi @giordano, Thanks for pitching in!

Sounds like we are doing process of elimination testing.

So I have 2 environments. A base environment and a test environment. The base environment is the broken one. The test environment (julia-PlotsGR) has only one package, Plots. Plots installed successfully on the test environment.

I planned to install one package at a time, from the list of base environment packages into the test environment, until the test environment broke. Started (and ended) with CairoMakie 😂

It looks like, perhaps obviously, that it's at least in part an issue with Cairo Makie. After adding CairoMakie, the Plots package broke the test environment.

The full REPL dump is below.

I couldn't help but notice that the Cairo Makie install downgrades FreeType: ⌅ [d7e528f0] ↓ FreeType2_jll v2.13.1+0 ⇒ v2.10.4+0.

I didn't tackle all the other packages in the base environment. This is a time consuming little project as it is!

I will likely uninstall the * Makie packages for now. They aren't a part of my current workflow. Hopefully the are the sole contributor to this issue.

That said, my setup can't be unique. Having 2 plotting environments isn't that weird I wouldn't think. Maybe my issues are confounded hardware? Like @jgilis I have a intel Mac. It's older, I've held it back on Big Sur.

Seems I fell into a package manager hole a week or so ago. Might be we can close this issue? Don't know the protocol around all that 😜.

Thanks for everyone's time and help! I really appreciate it!

(julia-PlotsGR) pkg> st
Status `~/TEMP/julia-PlotsGR/Project.toml`
⌃ [91a5bcdd] Plots v1.38.16
Info Packages marked with ⌃ have new versions available and may be upgradable.

(julia-PlotsGR) pkg> 

(julia-PlotsGR) pkg> 

julia> x = range(0, 10, length=100)

julia> y = sin.(x)

julia> plot(x, y)

(julia-PlotsGR) pkg> st -m
Status `~/TEMP/julia-PlotsGR/Manifest.toml`
  [d1d4a3ce] BitFlags v0.1.7
  [944b1d66] CodecZlib v0.7.2
  [35d6a980] ColorSchemes v3.22.0
  [3da002f7] ColorTypes v0.11.4
  [c3611d14] ColorVectorSpace v0.10.0
  [5ae59095] Colors v0.12.10
⌃ [34da2185] Compat v4.7.0
  [f0e56b4a] ConcurrentUtilities v2.2.1
  [d38c429a] Contour v0.6.2
  [9a962f9c] DataAPI v1.15.0
  [864edb3b] DataStructures v0.18.14
  [8bb1440f] DelimitedFiles v1.9.1
  [ffbed154] DocStringExtensions v0.9.3
  [460bff9d] ExceptionUnwrapping v0.1.9
  [c87230d0] FFMPEG v0.4.1
  [53c48c17] FixedPointNumbers v0.8.4
  [59287772] Formatting v0.4.2
  [28b8d3ca] GR v0.72.9
  [42e2da0e] Grisu v1.0.2
  [cd3eb016] HTTP v1.9.14
  [92d709cd] IrrationalConstants v0.2.2
  [1019f520] JLFzf v0.1.5
  [692b3bcd] JLLWrappers v1.4.1
  [682c06a0] JSON v0.21.4
  [b964fa9f] LaTeXStrings v1.3.0
  [23fbe1c1] Latexify v0.16.1
  [2ab3a3ac] LogExpFunctions v0.3.24
  [e6f89c97] LoggingExtras v1.0.0
  [1914dd2f] MacroTools v0.5.10
  [739be429] MbedTLS v1.1.7
  [442fdcdd] Measures v0.3.2
  [e1d29d7a] Missings v1.1.0
  [77ba4419] NaNMath v1.0.2
  [4d8831e6] OpenSSL v1.4.1
  [bac558e1] OrderedCollections v1.6.2
⌃ [69de0a69] Parsers v2.7.1
  [b98c9c47] Pipe v1.3.0
  [ccf2f8ad] PlotThemes v3.1.0
  [995b91a9] PlotUtils v1.3.5
⌃ [91a5bcdd] Plots v1.38.16
  [aea7be01] PrecompileTools v1.1.2
  [21216c6a] Preferences v1.4.0
  [3cdcf5f2] RecipesBase v1.3.4
  [01d81517] RecipesPipeline v0.6.12
  [189a3867] Reexport v1.2.2
  [05181044] RelocatableFolders v1.0.0
  [ae029012] Requires v1.3.0
  [6c6a2e73] Scratch v1.2.0
  [992d4aef] Showoff v1.0.3
  [777ac1f9] SimpleBufferStream v1.1.0
  [a2af1166] SortingAlgorithms v1.1.1
  [82ae8749] StatsAPI v1.6.0
  [2913bbd2] StatsBase v0.34.0
  [62fd8b95] TensorCore v0.1.1
  [3bb67fe8] TranscodingStreams v0.9.13
  [5c2747f8] URIs v1.4.2
  [1cfade01] UnicodeFun v0.4.1
⌃ [1986cc42] Unitful v1.15.0
  [45397f5d] UnitfulLatexify v1.6.3
  [41fe7b60] Unzip v0.2.0
  [6e34b625] Bzip2_jll v1.0.8+0
  [83423d85] Cairo_jll v1.16.1+1
  [2e619515] Expat_jll v2.5.0+0
⌃ [b22a6f82] FFMPEG_jll v4.4.2+2
  [a3f928ae] Fontconfig_jll v2.13.93+0
  [d7e528f0] FreeType2_jll v2.13.1+0
  [559328eb] FriBidi_jll v1.0.10+0
  [0656b61e] GLFW_jll v3.3.8+0
  [d2c73de3] GR_jll v0.72.9+0
  [78b55507] Gettext_jll v0.21.0+0
  [7746bdde] Glib_jll v2.74.0+2
  [3b182d85] Graphite2_jll v1.3.14+0
  [2e76f6c2] HarfBuzz_jll v2.8.1+1
  [aacddb02] JpegTurbo_jll v2.1.91+0
  [c1c5ebd0] LAME_jll v3.100.1+0
  [88015f11] LERC_jll v3.0.0+1
  [1d63c593] LLVMOpenMP_jll v15.0.4+0
  [dd4b983a] LZO_jll v2.10.1+0
⌅ [e9f186c6] Libffi_jll v3.2.2+1
  [d4300ac3] Libgcrypt_jll v1.8.7+0
  [7e76a0d4] Libglvnd_jll v1.6.0+0
  [7add5ba3] Libgpg_error_jll v1.42.0+0
  [94ce4f54] Libiconv_jll v1.16.1+2
  [4b2f31a3] Libmount_jll v2.35.0+0
  [89763e89] Libtiff_jll v4.5.1+1
  [38a345b3] Libuuid_jll v2.36.0+0
  [e7412a2a] Ogg_jll v1.3.5+1
⌅ [458c3c95] OpenSSL_jll v1.1.21+0
  [91d4177d] Opus_jll v1.3.2+0
  [30392449] Pixman_jll v0.42.2+0
  [c0090381] Qt6Base_jll v6.4.2+3
  [a2964d1f] Wayland_jll v1.21.0+0
  [2381bf8a] Wayland_protocols_jll v1.25.0+0
  [02c8fc9c] XML2_jll v2.10.3+0
  [aed1982a] XSLT_jll v1.1.34+0
  [ffd25f8a] XZ_jll v5.4.3+1
  [4f6342f7] Xorg_libX11_jll v1.8.6+0
  [0c0b7dd1] Xorg_libXau_jll v1.0.11+0
  [935fb764] Xorg_libXcursor_jll v1.2.0+4
  [a3789734] Xorg_libXdmcp_jll v1.1.4+0
  [1082639a] Xorg_libXext_jll v1.3.4+4
  [d091e8ba] Xorg_libXfixes_jll v5.0.3+4
  [a51aa0fd] Xorg_libXi_jll v1.7.10+4
  [d1454406] Xorg_libXinerama_jll v1.1.4+4
  [ec84b674] Xorg_libXrandr_jll v1.5.2+4
  [ea2f1a96] Xorg_libXrender_jll v0.9.10+4
  [14d82f49] Xorg_libpthread_stubs_jll v0.1.1+0
  [c7cfdc94] Xorg_libxcb_jll v1.15.0+0
  [cc61e674] Xorg_libxkbfile_jll v1.1.2+0
  [12413925] Xorg_xcb_util_image_jll v0.4.0+1
  [2def613f] Xorg_xcb_util_jll v0.4.0+1
  [975044d2] Xorg_xcb_util_keysyms_jll v0.4.0+1
  [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.9+1
  [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.1+1
  [35661453] Xorg_xkbcomp_jll v1.4.6+0
  [33bec58e] Xorg_xkeyboard_config_jll v2.39.0+0
  [c5fb5394] Xorg_xtrans_jll v1.5.0+0
  [3161d3a3] Zstd_jll v1.5.5+0
⌅ [214eeab7] fzf_jll v0.29.0+0
  [a4ae2306] libaom_jll v3.4.0+0
  [0ac62f75] libass_jll v0.15.1+0
  [f638f0a6] libfdk_aac_jll v2.0.2+0
  [b53b4c65] libpng_jll v1.6.38+0
  [f27f6e37] libvorbis_jll v1.3.7+1
  [1270edf5] x264_jll v2021.5.5+0
  [dfaa095f] x265_jll v3.5.0+0
  [d8fb68d0] xkbcommon_jll v1.4.1+0
  [0dad84c5] ArgTools v1.1.1
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching
  [b77e0a4c] InteractiveUtils
  [b27032c2] LibCURL v0.6.3
  [76f85450] LibGit2
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [a63ad114] Mmap
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.9.2
  [de0858da] Printf
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization
  [6462fe0b] Sockets
  [2f01184e] SparseArrays
  [10745b16] Statistics v1.9.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [e66e0078] CompilerSupportLibraries_jll v1.0.5+0
  [deac9b47] LibCURL_jll v7.84.0+0
  [29816b5a] LibSSH2_jll v1.10.2+0
  [c8ffd9c3] MbedTLS_jll v2.28.2+0
  [14a3606d] MozillaCACerts_jll v2022.10.11
  [4536629a] OpenBLAS_jll v0.3.21+4
  [05823500] OpenLibm_jll v0.8.1+0
  [efcefdf7] PCRE2_jll v10.42.0+0
  [bea87d4a] SuiteSparse_jll v5.10.1+6
  [83775a58] Zlib_jll v1.2.13+0
  [8e850b90] libblastrampoline_jll v5.8.0+0
  [8e850ede] nghttp2_jll v1.48.0+0
  [3f19e933] p7zip_jll v17.4.0+0
Info Packages marked with ⌃ and ⌅ have new versions available, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

(julia-PlotsGR) pkg> add CairoMakie
   Resolving package versions...
   Installed FillArrays ─ v1.5.0
    Updating `~/TEMP/julia-PlotsGR/Project.toml`
  [13f3f980] + CairoMakie v0.10.7
    Updating `~/TEMP/julia-PlotsGR/Manifest.toml`
  [621f4979] + AbstractFFTs v1.5.0
  [398f06c4] + AbstractLattices v0.2.1
  [1520ce14] + AbstractTrees v0.4.4
  [79e6a3ab] + Adapt v3.6.2
  [27a7e980] + Animations v0.4.1
  [4fba245c] + ArrayInterface v7.4.11
⌅ [67c07d97] + Automa v0.8.3
  [13072b0f] + AxisAlgorithms v1.0.1
  [39de3d68] + AxisArrays v0.4.7
  [fa961155] + CEnum v0.4.2
  [96374032] + CRlibm v1.0.1
  [159f3aea] + Cairo v1.0.5
  [13f3f980] + CairoMakie v0.10.7
  [49dc2e85] + Calculus v0.5.1
  [d360d2e6] + ChainRulesCore v1.16.0
  [a2cac450] + ColorBrewer v0.4.0
⌅ [c3611d14] ↓ ColorVectorSpace v0.10.0 ⇒ v0.9.10
  [861a8166] + Combinatorics v1.0.2
  [bbf7d656] + CommonSubexpressions v0.3.0
  [34da2185] ↑ Compat v4.7.0 ⇒ v4.9.0
  [187b0558] + ConstructionBase v1.5.3
  [e2d170a0] + DataValueInterfaces v1.0.0
⌅ [927a84f5] + DelaunayTriangulation v0.7.2
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [31c24e10] + Distributions v0.25.98
  [fa6b7ba4] + DualNumbers v0.6.8
  [4e289a0a] + EnumX v1.0.4
  [90fa49ef] + ErrorfreeArithmetic v0.5.2
  [429591f6] + ExactPredicates v2.2.5
  [411431e0] + Extents v0.1.1
  [7a1cc6ca] + FFTW v1.7.1
  [fa42c844] + FastRounding v0.3.1
  [5789e2e9] + FileIO v1.16.1
  [1a297f60] + FillArrays v1.5.0
  [6a86dc24] + FiniteDiff v2.21.1
  [f6369f11] + ForwardDiff v0.10.35
  [b38be410] + FreeType v4.0.0
  [663a7486] + FreeTypeAbstraction v0.10.0
  [46192b85] + GPUArraysCore v0.1.5
  [cf35fbd7] + GeoInterface v1.3.1
  [5c1252a2] + GeometryBasics v0.4.9
  [a2bd30eb] + Graphics v1.1.2
  [3955a311] + GridLayoutBase v0.9.1
  [34004b35] + HypergeometricFunctions v0.3.23
  [2803e5a7] + ImageAxes v0.6.11
⌃ [c817782e] + ImageBase v0.1.5
⌅ [a09fc81d] + ImageCore v0.9.4
  [82e4d734] + ImageIO v0.6.7
  [bc367c6b] + ImageMetadata v0.9.9
  [9b13fd28] + IndirectArrays v1.0.0
  [d25df0c9] + Inflate v0.1.3
  [18e54dd8] + IntegerMathUtils v0.1.2
  [a98d9a8b] + Interpolations v0.14.7
  [d1acc4aa] + IntervalArithmetic v0.20.9
  [8197267c] + IntervalSets v0.7.7
  [f1662d9f] + Isoband v0.1.1
  [c8e1da08] + IterTools v1.8.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [b835a17e] + JpegTurbo v0.1.3
  [5ab0869b] + KernelDensity v0.6.7
  [8cdb02fc] + LazyModules v0.3.1
  [9c8b4983] + LightXML v0.9.0
  [d3d80556] + LineSearches v7.2.0
  [9b3f67b0] + LinearAlgebraX v0.1.12
  [ee78f7c6] + Makie v0.19.7
  [20f20a25] + MakieCore v0.6.4
  [dbb5928d] + MappedArrays v0.4.2
  [7eb4fadd] + Match v1.2.0
  [0a4f8689] + MathTeXEngine v0.5.6
  [7475f97c] + Mods v1.3.3
  [e94cdb99] + MosaicViews v0.3.4
  [3b2b4ff1] + Multisets v0.4.4
  [d41bc354] + NLSolversBase v7.8.3
  [f09324ee] + Netpbm v1.1.1
  [510215fc] + Observables v0.5.4
  [6fe1bfb0] + OffsetArrays v1.12.10
  [52e1d378] + OpenEXR v0.3.2
  [429524aa] + Optim v1.7.6
  [90014a1f] + PDMats v0.11.17
  [f57f5aa1] + PNGFiles v0.4.0
  [19eb6ba3] + Packing v0.5.0
  [5432bcbf] + PaddedViews v0.5.12
  [d96e819e] + Parameters v0.12.3
  [69de0a69] ↑ Parsers v2.7.1 ⇒ v2.7.2
  [2ae35dd2] + Permutations v0.4.16
  [eebad327] + PkgVersion v0.3.2
  [647866c9] + PolygonOps v0.1.2
  [f27b6e38] + Polynomials v3.2.13
  [85a6dd25] + PositiveFactorizations v0.2.4
  [27ebfcd6] + Primes v0.5.4
  [92933f4c] + ProgressMeter v1.7.2
  [4b34888f] + QOI v1.0.0
  [1fd47b50] + QuadGK v2.8.2
  [b3c3ace0] + RangeArrays v0.3.2
  [c84ed2f1] + Ratios v0.4.5
  [286e9d63] + RingLists v0.2.7
  [79098fc4] + Rmath v0.7.1
  [5eaf0fd0] + RoundingEmulator v0.2.1
  [fdea26ae] + SIMD v3.4.5
  [7b38b023] + ScanByte v0.4.0
  [3cc68bcd] + SetRounding v0.2.1
  [efcf1570] + Setfield v1.1.1
  [65257c39] + ShaderAbstractions v0.3.0
  [73760f76] + SignedDistanceFields v0.4.0
  [55797a34] + SimpleGraphs v0.8.4
  [ec83eff0] + SimplePartitions v0.3.0
  [cc47b68c] + SimplePolynomials v0.2.12
  [a6525b86] + SimpleRandom v0.3.1
  [699a6c99] + SimpleTraits v0.9.4
  [45858cf5] + Sixel v0.1.3
  [276daf66] + SpecialFunctions v2.3.0
⌅ [c5dd0088] + StableHashTraits v0.3.1
  [cae243ae] + StackViews v0.1.1
  [90137ffa] + StaticArrays v1.6.2
  [1e83bf80] + StaticArraysCore v1.4.2
  [4c63d2b9] + StatsFuns v1.3.0
  [09ab397b] + StructArrays v0.6.15
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.10.1
  [731e570b] + TiffImages v0.6.4
  [981d1d27] + TriplotBase v0.1.0
  [9d95972d] + TupleTools v1.3.0
  [3a884ed6] + UnPack v1.0.2
  [1986cc42] ↑ Unitful v1.15.0 ⇒ v1.16.1
  [efce3f68] + WoodburyMatrices v0.5.5
  [4e9b3aee] + CRlibm_jll v1.0.1+0
  [5ae413db] + EarCut_jll v2.2.4+0
  [f5851436] + FFTW_jll v3.3.10+0
⌅ [d7e528f0] ↓ FreeType2_jll v2.13.1+0 ⇒ v2.10.4+0
  [905a6f67] + Imath_jll v3.1.7+0
  [1d5cc7b8] + IntelOpenMP_jll v2023.1.0+0
  [856f044c] + MKL_jll v2023.1.0+0
  [18a262bb] + OpenEXR_jll v3.1.4+0
  [efe28fd5] + OpenSpecFun_jll v0.5.5+0
  [36c8627f] + Pango_jll v1.50.9+0
  [f50d1b31] + Rmath_jll v0.4.0+0
  [9a68df92] + isoband_jll v0.2.3+0
  [075b6546] + libsixel_jll v1.10.3+0
  [8bf52ea8] + CRC32c
  [8ba89e20] + Distributed
  [9fa8497b] + Future
  [4af54fe1] + LazyArtifacts
  [1a1011a3] + SharedArrays
  [4607b0f0] + SuiteSparse
        Info Packages marked with ⌃ and ⌅ have new versions available, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
Precompiling project...
  ✗ Plots → UnitfulExt
  ✗ Plots → GeometryBasicsExt
  ✗ Plots → FileIOExt
  11 dependencies successfully precompiled in 278 seconds. 280 already precompiled.
  3 dependencies errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the packages

damn.

giordano commented 1 year ago

Ah, what version of macOS do you have? Is it 11 or any older version by any chance? I think we're facing the change described in https://github.com/giordano/macos-compatibility-version, in macOS 12 the compatibility version check has been disabled completely, that's why I can't reproduce any error, even though I now see there's indeed a problem.

giordano commented 1 year ago

@jheinen GR depends directly on freetype, right? I see GR CMake script searches for it, libGR links to libfreetype

shell> otool -L $(GR_jll.libGR_path)
/Users/mose/.julia/artifacts/c420634d1c4328f328d728d77aadf6116a9fabc8/lib/libGR.dylib:
    @rpath/libGR.dylib (compatibility version 0.0.0, current version 0.0.0)
    /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.60.1)
    @rpath/libjpeg.62.dylib (compatibility version 62.0.0, current version 62.4.0)
    @rpath/libpng16.16.dylib (compatibility version 16.0.0, current version 16.37.0)
    @rpath/libfreetype.6.dylib (compatibility version 27.0.0, current version 27.0.0)
    @rpath/libz.1.dylib (compatibility version 1.0.0, current version 1.2.13)

but FreeType2 isn't listed explicitly in the dependencies, which also means we can't currently put a compat bound.

eljfe commented 1 year ago

Bullseye... MacOS 11.7.8. 😃

giordano commented 1 year ago

Bullseye... MacOS 11.7.8. 😃

Ok, thanks, that explains why I can't reproduce: I'm on macOS 12.6, the compatibility check is completely skipped in newer versions. Now we only need to figure out how to best declare the compatibility between freetype and gr.

jgilis commented 1 year ago

FWIW, I'm on 11.6.

jheinen commented 1 year ago

So you think, a combat entry FreeType_jll = "=2.13.1" would fix the problem?

giordano commented 1 year ago

No, I'm thinking of https://github.com/JuliaPackaging/Yggdrasil/pull/7164

giordano commented 1 year ago

@eljfe @jgilis can you please update your packages? You should get GR_jll@0.72.9+1, from https://github.com/JuliaPackaging/Yggdrasil/pull/7170, which I believe fixes your problem.

eljfe commented 1 year ago

Sorry @giordano reinstalling Plots failed. I tried my base environment first, then the smaller test environment. Both failed. Below is the dump from the test environment.

julia> using Pkg

julia> Pkg.activate(".")
  Activating project at `~/TEMP/julia-PlotsGR`

(julia-PlotsGR) pkg> st
Status `~/TEMP/julia-PlotsGR/Project.toml`
  [13f3f980] CairoMakie v0.10.7
⌃ [91a5bcdd] Plots v1.38.16
Info Packages marked with ⌃ have new versions available and may be upgradable.

(julia-PlotsGR) pkg> up Plots
    Updating registry at `~/.julia/registries/General.toml`
    Updating `~/TEMP/julia-PlotsGR/Project.toml`
  [91a5bcdd] ↑ Plots v1.38.16 ⇒ v1.38.17
    Updating `~/TEMP/julia-PlotsGR/Manifest.toml`
  [91a5bcdd] ↑ Plots v1.38.16 ⇒ v1.38.17
Precompiling project...
  ✗ Plots
  15 dependencies successfully precompiled in 340 seconds. 275 already precompiled. 3 skipped during auto due to previous errors.
  1 dependency errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the package
giordano commented 1 year ago

What's the version of GR_jll? I don't see you updated it. What's

]st -m GR_jll

?

eljfe commented 1 year ago

Aha, thought julia would update it automatically. 🙂

But wait... Success!!

(julia-PlotsGR) pkg> up GR_jll
    Updating registry at `~/.julia/registries/General.toml`
   Installed GR_jll ─ v0.72.9+1
  Downloaded artifact: GR
  No Changes to `~/TEMP/julia-PlotsGR/Project.toml`
    Updating `~/TEMP/julia-PlotsGR/Manifest.toml`
  [d2c73de3] ↑ GR_jll v0.72.9+0 ⇒ v0.72.9+1
Precompiling project...
  16 dependencies successfully precompiled in 295 seconds. 278 already precompiled.

julia> using Plots

julia> x = range(0, 10, length=100)
0.0:0.10101010101010101:10.0

julia> y = sin.(2Ï€*x);

julia> plot(x,y)

Works in all environments.

You fixed it!! That's awesome.

@giordano, @jheinen thanks again,

giordano commented 1 year ago

Aha, thought julia would update it automatically. 🙂

No, because you asked to update a single package.

But wait... Success!!

Thanks for the confirmation, I guess the ticket can be closed then.

jheinen commented 1 year ago

Thanks to all for testing/fixing!