jhennies / CebraEM

MIT License
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Invalid cpu configuration on slurm cluster #62

Open mrheinnecker opened 4 months ago

mrheinnecker commented 4 months ago

When executing: cem-run supervoxels --cluster slurm -c 64 -g 12

the first job: run_quantile_norm cannot be submitted to the cluster with the error message: "job submission failed: Requested node configuration is not available" - or something vcery similar

I fixed it by changing the following file: /cebra-em/cebra_em/snakefiles/run_main.smk

at line 153 from resources: cpus=os.cpus(), time_min=60, mem_mb=32000

into resources: cpus=64, time_min=60, mem_mb=33000